CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.207643.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g57390: AGL18 (HF=3e-1)

Module size 6 genes

NF 0.38

%ile 64.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 86.0 0.90 PtpAffx.207643.1.S1_at pmrna15162 hypothetical protein - 3e-1 At3g57390 AGL18 O.I. H.G. S.X.
0.50 78.6 0.90 PtpAffx.9819.1.S1_at DN497878 - - 9e-1 At5g35737 unknown protein O.I. H.G. S.X.
0.46 73.7 0.90 PtpAffx.212939.1.S1_at pmrna25319 hypothetical protein - 2e-8 At5g07380 unknown protein O.I. H.G. S.X.
0.40 67.0 0.90 PtpAffx.202991.1.S1_at pmrna5919 hypothetical protein - 6e-1 At3g04510 LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2) O.I. H.G. S.X.
0.31 53.7 0.89 PtpAffx.116755.1.A1_at CK089718 - - 6e-1 At1g80160 lactoylglutathione lyase family protein / glyoxalase I family protein O.I. H.G. S.X.
0.19 32.7 0.89 PtpAffx.225864.1.S1_at pmrna45498 hypothetical protein - 1e+0 At4g16500 cysteine protease inhibitor family protein / cystatin family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.60	86.0	0.90	PtpAffx.207643.1.S1_at	pmrna15162	hypothetical protein	-	3e-1	At3g57390	AGL18	O.I.	H.G.	S.X.
0.50	78.6	0.90	PtpAffx.9819.1.S1_at	DN497878	-	-	9e-1	At5g35737	unknown protein	O.I.	H.G.	S.X.
0.46	73.7	0.90	PtpAffx.212939.1.S1_at	pmrna25319	hypothetical protein	-	2e-8	At5g07380	unknown protein	O.I.	H.G.	S.X.
0.40	67.0	0.90	PtpAffx.202991.1.S1_at	pmrna5919	hypothetical protein	-	6e-1	At3g04510	LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2)	O.I.	H.G.	S.X.
0.31	53.7	0.89	PtpAffx.116755.1.A1_at	CK089718	-	-	6e-1	At1g80160	lactoylglutathione lyase family protein / glyoxalase I family protein	O.I.	H.G.	S.X.
0.19	32.7	0.89	PtpAffx.225864.1.S1_at	pmrna45498	hypothetical protein	-	1e+0	At4g16500	cysteine protease inhibitor family protein / cystatin family protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.50	78.6	0.85	PtpAffx.127890.1.A1_at	CV243402	-	-	2e+0	At5g37970	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	O.I.	H.G.	S.X.
0.50	78.6	0.85	PtpAffx.219245.1.S1_s_at	pmrna35104	hypothetical protein	-	7e-1	At1g76760	ATY1 (ARABIDOPSIS THIOREDOXIN Y1)	O.I.	H.G.	S.X.
0.50	78.6	0.88	PtpAffx.204869.1.S1_at	pmrna9624	hypothetical protein	-	3e-6	At1g51310	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	O.I.	H.G.	S.X.
0.50	78.6	0.88	PtpAffx.221219.1.S1_at	pmrna37938	hypothetical protein	-	3e-1	At1g15680	F-box family protein	O.I.	H.G.	S.X.
0.46	73.7	0.84	PtpAffx.200668.1.S1_at	pmrna1299	hypothetical protein	-	1e+0	At4g00130	-	O.I.	H.G.	S.X.
0.44	71.9	0.87	PtpAffx.16175.1.S1_at	DN496213	-	-	9e-1	At3g48209	-	O.I.	H.G.	S.X.
0.44	71.9	0.88	PtpAffx.217431.1.S1_at	pmrna32685	hypothetical protein	-	3e+0	At5g46250	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.
0.44	71.9	0.89	PtpAffx.205470.1.S1_at	pmrna10815	hypothetical protein	-	5e-1	At5g44110	POP1	O.I.	H.G.	S.X.
0.40	67.0	0.84	PtpAffx.121002.1.A1_at	CV257542	-	-	2e-1	At5g14000	anac084 (Arabidopsis NAC domain containing protein 84)	O.I.	H.G.	S.X.
0.40	67.0	0.87	PtpAffx.140052.1.A1_at	CV274477	-	-	1e+0	At1g01970	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.
0.40	67.0	0.87	PtpAffx.121365.1.A1_at	CV242840	-	-	2e+0	At1g20140	ASK4 (ARABIDOPSIS SKP1-LIKE 4)	O.I.	H.G.	S.X.
0.40	67.0	0.88	PtpAffx.48367.1.S1_at	BU888923	-	-	5e+0	At4g39930	unknown protein	O.I.	H.G.	S.X.
0.36	61.6	0.85	PtpAffx.203842.1.S1_at	pmrna7585	cytochrome P450	-	2e-4	At2g22330	CYP79B3	O.I.	H.G.	S.X.
0.36	61.6	0.86	PtpAffx.215123.1.S1_at	pmrna29128	hypothetical protein	-	2e-1	At4g33870	peroxidase, putative	O.I.	H.G.	S.X.
0.33	57.5	0.84	PtpAffx.201148.1.S1_at	pmrna2254	hypothetical protein	-	5e+0	At5g46915	transcriptional factor B3 family protein	O.I.	H.G.	S.X.
0.33	57.5	0.85	PtpAffx.131139.1.S1_at	BU820370	-	-	1e+0	At2g07774	unknown protein	O.I.	H.G.	S.X.
0.33	57.5	0.89	PtpAffx.63346.1.A1_at	CV243969	-	-	2e-2	At1g10150	carbohydrate binding	O.I.	H.G.	S.X.
0.31	53.7	0.85	RPTR-Ptp-AJ132968-1_at	RPTR-Ptp-AJ132968-1	-	-			-	O.I.	H.G.	S.X.
0.31	53.7	0.85	PtpAffx.217357.1.S1_at	pmrna32579	hypothetical protein	-	1e+0	At2g04622	unknown protein	O.I.	H.G.	S.X.
0.30	52.0	0.82	PtpAffx.214430.1.S1_at	pmrna28063	hypothetical protein	-	2e-1	At4g11290	peroxidase, putative	O.I.	H.G.	S.X.
0.30	52.0	0.85	PtpAffx.219355.1.S1_at	pmrna35253	-	-	5e+0	At2g19700	unknown protein	O.I.	H.G.	S.X.
0.29	50.5	0.86	PtpAffx.216501.1.S1_at	pmrna31311	hypothetical protein	-	2e+0	At5g47170	unknown protein	O.I.	H.G.	S.X.
0.29	50.5	0.86	PtpAffx.880.2.S1_at	BU867514	hypothetical protein	-	2e-8	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	O.I.	H.G.	S.X.
0.29	50.5	0.88	PtpAffx.216845.1.S1_x_at	pmrna31885	hypothetical protein	-	5e-1	At4g03165	unknown protein	O.I.	H.G.	S.X.
0.29	50.5	0.88	PtpAffx.27724.1.S1_at	BU873611	-	-	2e-1	At1g03140	splicing factor Prp18 family protein	O.I.	H.G.	S.X.
0.29	50.5	0.90	PtpAffx.219686.1.S1_at	pmrna35660	cytochrome P450	-	1e+0	At3g14650	CYP72A11	O.I.	H.G.	S.X.
0.27	47.1	0.86	PtpAffx.223036.1.S1_at	pmrna40823	hypothetical protein	-	2e+1	At3g57540	remorin family protein	O.I.	H.G.	S.X.
0.27	47.1	0.87	PtpAffx.209052.1.S1_at	pmrna17920	hypothetical protein	-	7e-1	At4g00467	-	O.I.	H.G.	S.X.
0.27	47.1	0.87	Ptp.2186.2.S1_at	CV230348	hypothetical protein	-	2e-8	At2g24200	cytosol aminopeptidase	O.I.	H.G.	S.X.
0.26	45.2	0.86	Ptp.2694.2.S1_at	CK093478	hypothetical protein	-	1e-7	At1g79270	ECT8 (evolutionarily conserved C-terminal region 8)	O.I.	H.G.	S.X.
0.25	43.6	0.85	PtpAffx.73961.1.A1_at	DN489114	-	-	2e-2	At1g77340	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.
0.25	43.6	0.87	Ptp.3357.1.S1_at	DN485812	-	-	5e-6	At3g23390	60S ribosomal protein L36a/L44 (RPL36aA)	O.I.	H.G.	S.X.
0.25	43.6	0.88	PtpAffx.44134.4.S1_at	CV228495	-	-	6e-1	At5g22180	unknown protein	O.I.	H.G.	S.X.
0.25	43.6	0.90	PtpAffx.220669.1.S1_at	pmrna37079	hypothetical protein	-	4e+1	At5g51910	TCP family transcription factor, putative	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.8 99.4 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
9.2 98.8 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.6 91.3 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.7 85.5 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.7 85.5 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
13.8	99.4	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
9.2	98.8	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.6	91.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	PtpAffx.207643.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g57390: AGL18 (HF=3e-1)
Module size	6 genes
NF	0.38
%ile	64.4

Co-expression analysis

Gene ID PtpAffx.207643.1.S1_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At3g57390: AGL18 (HF=3e-1) Module size 6 genes NF 0.38 %ile 64.4

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.207643.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g57390: AGL18 (HF=3e-1)

Module size 6 genes

NF 0.38

%ile 64.4

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays