Co-expression analysis

Gene ID PtpAffx.207643.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g57390: AGL18 (HF=3e-1)
Module size 6 genes
NF 0.38
%ile 64.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6086.00.90PtpAffx.207643.1.S1_atpmrna15162hypothetical protein-3e-1At3g57390AGL18O.I.H.G.S.X.
0.5078.60.90PtpAffx.9819.1.S1_atDN497878--9e-1At5g35737unknown proteinO.I.H.G.S.X.
0.4673.70.90PtpAffx.212939.1.S1_atpmrna25319hypothetical protein-2e-8At5g07380unknown proteinO.I.H.G.S.X.
0.4067.00.90PtpAffx.202991.1.S1_atpmrna5919hypothetical protein-6e-1At3g04510LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2)O.I.H.G.S.X.
0.3153.70.89PtpAffx.116755.1.A1_atCK089718--6e-1At1g80160lactoylglutathione lyase family protein / glyoxalase I family proteinO.I.H.G.S.X.
0.1932.70.89PtpAffx.225864.1.S1_atpmrna45498hypothetical protein-1e+0At4g16500cysteine protease inhibitor family protein / cystatin family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.899.4GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
9.298.8GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.691.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.8230.1.A1_at, orthologous to the query gene, PtpAffx.207643.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9199.0Zm.8230.1.A1_atAt3g57390hypothetical protein LOC100191834-3e+0At5g15790zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3641.3Zm.13785.1.S1_s_atAt3g57390--1e+0At3g52525OFP6 (OVATE FAMILY PROTEIN 6)O.I.H.G.S.X.
0.2622.7Zm.14115.1.A1_atAt3g57390hypothetical protein LOC100278990-2e+0At5g19750peroxisomal membrane 22 kDa family proteinO.I.H.G.S.X.
0.147.7Zm.13619.1.A1_atAt3g57390hypothetical protein LOC100192497 /// serine/threonine-protein kinase SAPK2 /// serine/threonine-protein kinase SAPK2-1e-30At4g33950OST1 (OPEN STOMATA 1)O.I.H.G.S.X.
0.125.9Zm.16794.1.A1_atAt3g57390isopentenyl pyrophosphate isomerase-7e-35At5g16440IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)O.I.H.G.S.X.
0.051.9Zm.12590.1.S1_atAt3g57390--2e-53At5g16930AAA-type ATPase family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera



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