CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.207643.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g57390: AGL18 (HF=3e-1)

Module size 6 genes

NF 0.38

%ile 64.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 86.0 0.90 PtpAffx.207643.1.S1_at pmrna15162 hypothetical protein - 3e-1 At3g57390 AGL18 O.I. H.G. S.X.
0.50 78.6 0.90 PtpAffx.9819.1.S1_at DN497878 - - 9e-1 At5g35737 unknown protein O.I. H.G. S.X.
0.46 73.7 0.90 PtpAffx.212939.1.S1_at pmrna25319 hypothetical protein - 2e-8 At5g07380 unknown protein O.I. H.G. S.X.
0.40 67.0 0.90 PtpAffx.202991.1.S1_at pmrna5919 hypothetical protein - 6e-1 At3g04510 LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2) O.I. H.G. S.X.
0.31 53.7 0.89 PtpAffx.116755.1.A1_at CK089718 - - 6e-1 At1g80160 lactoylglutathione lyase family protein / glyoxalase I family protein O.I. H.G. S.X.
0.19 32.7 0.89 PtpAffx.225864.1.S1_at pmrna45498 hypothetical protein - 1e+0 At4g16500 cysteine protease inhibitor family protein / cystatin family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.8 99.4 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
9.2 98.8 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.6 91.3 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.7 85.5 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.7 85.5 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the rice gene, Os04g0234500, orthologous to the query gene, PtpAffx.207643.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.62 81.5 Os04g0234500 At3g57390 - - 8e-1 At1g27450 APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) O.I. H.G. S.X.
0.78 93.4 Os05g0582700 At3g57390 - - 1e+1 At5g57420 IAA33 (INDOLE-3-ACETIC ACID INDUCIBLE 33) O.I. H.G. S.X.
0.70 88.4 Os03g0453000 At3g57390 - - 7e+0 At5g45740 unknown protein O.I. H.G. S.X.
0.63 82.7 Os05g0454100 At3g57390 - - 2e+1 At5g42567 - O.I. H.G. S.X.
0.61 81.2 Os12g0539300 At3g57390 - - 6e-3 At5g26820 ATIREG3 (IRON-REGULATED PROTEIN 3) O.I. H.G. S.X.
0.60 79.7 Os10g0126200 At3g57390 - - 9e-1 At5g53580 aldo/keto reductase family protein O.I. H.G. S.X.
0.54 71.9 Os01g0861600 At3g57390 - - 6e-1 At3g45150 TCP16 (TCP domain protein 16) O.I. H.G. S.X.
0.50 68.0 Os01g0573300 At3g57390 - - 2e-1 At1g28290 AGP31 (arabinogalactan-protein 31) O.I. H.G. S.X.
0.47 62.3 Os02g0231100 At3g57390 - - 4e-1 At4g24015 zinc finger (RING-H2 type) protein-related O.I. H.G. S.X.
0.44 58.1 Os09g0402400 At3g57390 - - 4e+0 At2g44360 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage