Co-expression analysis

Gene ID	PtpAffx.207643.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g57390: AGL18 (HF=3e-1)
Module size	6 genes
NF	0.38
%ile	64.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	86.0	0.90	PtpAffx.207643.1.S1_at	pmrna15162	hypothetical protein	-	3e-1	At3g57390	AGL18	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.90	PtpAffx.9819.1.S1_at	DN497878	-	-	9e-1	At5g35737	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.90	PtpAffx.212939.1.S1_at	pmrna25319	hypothetical protein	-	2e-8	At5g07380	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.90	PtpAffx.202991.1.S1_at	pmrna5919	hypothetical protein	-	6e-1	At3g04510	LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.89	PtpAffx.116755.1.A1_at	CK089718	-	-	6e-1	At1g80160	lactoylglutathione lyase family protein / glyoxalase I family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.89	PtpAffx.225864.1.S1_at	pmrna45498	hypothetical protein	-	1e+0	At4g16500	cysteine protease inhibitor family protein / cystatin family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.8	99.4	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
9.2	98.8	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.6	91.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the barley gene, Contig20396_at, orthologous to the query gene, PtpAffx.207643.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	Contig20396_at	At3g57390	-	-	6e+0	Atmg00240	-	O.I.	H.G.	S.X.	Please select
0.46	61.0	Contig13499_at	At3g57390	-	-	5e+0	Atmg01330	-	O.I.	H.G.	S.X.	Please select
0.41	53.9	HO04L23S_at	At3g57390	-	-	1e+0	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig10183_at	At3g57390	-	-	3e+0	At4g32710	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig14429_at	At3g57390	-	-	2e-12	At3g47690	ATEB1A	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig17142_at	At3g57390	-	-	1e-3	At2g19450	TAG1 (TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1)	O.I.	H.G.	S.X.	Please select
0.31	38.6	HVSMEa0008H22r2_at	At3g57390	-	-	5e+0	At1g74730	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig4278_at	At3g57390	-	-	7e-2	At1g76550	pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative	O.I.	H.G.	S.X.	Please select
0.27	32.1	HE01O15u_at	At3g57390	-	-	3e+0	At3g49845	-	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig2779_at	At3g57390	-	-	2e-6	At4g32940	GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig17611_at	At3g57390	-	-	2e+0	At3g03950	protein binding	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig12839_at	At3g57390	-	-	2e+0	At1g59171	ATP binding / inositol pentakisphosphate 2-kinase	O.I.	H.G.	S.X.	Please select
0.11	9.4	Contig2_at	At3g57390	-	-	3e-4	At2g07560	AHA6 (Arabidopsis H(+)-ATPase 6)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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