Co-expression analysis

Gene ID	PtpAffx.207643.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g57390: AGL18 (HF=3e-1)
Module size	6 genes
NF	0.38
%ile	64.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	86.0	0.90	PtpAffx.207643.1.S1_at	pmrna15162	hypothetical protein	-	3e-1	At3g57390	AGL18	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.90	PtpAffx.9819.1.S1_at	DN497878	-	-	9e-1	At5g35737	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.90	PtpAffx.212939.1.S1_at	pmrna25319	hypothetical protein	-	2e-8	At5g07380	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.90	PtpAffx.202991.1.S1_at	pmrna5919	hypothetical protein	-	6e-1	At3g04510	LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.89	PtpAffx.116755.1.A1_at	CK089718	-	-	6e-1	At1g80160	lactoylglutathione lyase family protein / glyoxalase I family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.89	PtpAffx.225864.1.S1_at	pmrna45498	hypothetical protein	-	1e+0	At4g16500	cysteine protease inhibitor family protein / cystatin family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.8	99.4	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
9.2	98.8	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.6	91.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.89980.1.S1_at, orthologous to the query gene, PtpAffx.207643.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	99.2	GmaAffx.89980.1.S1_at	At3g57390	-	-	1e-31	At1g15310	ATHSRP54A (ARABIDOPSIS THALIANA SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT)	O.I.	H.G.	S.X.	Please select
0.59	79.5	GmaAffx.82721.1.S1_at	At3g57390	-	-	6e-67	At3g05530	RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A)	O.I.	H.G.	S.X.	Please select
0.59	79.5	GmaAffx.82606.1.S1_at	At3g57390	-	-	2e-6	At5g52580	RAB GTPase activator	O.I.	H.G.	S.X.	Please select
0.57	78.8	Gma.16282.4.S1_a_at	At3g57390	-	-	1e-20	At1g43190	polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative	O.I.	H.G.	S.X.	Please select
0.56	78.2	GmaAffx.86702.1.S1_at	At3g57390	-	-	6e-28	At4g24100	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.54	74.8	GmaAffx.62391.1.S1_at	At3g57390	-	-	1e-4	At5g08500	transmembrane CLPTM1 family protein	O.I.	H.G.	S.X.	Please select
0.54	74.8	Gma.9706.3.S1_at	At3g57390	-	-	2e-5	At2g39840	TOPP4	O.I.	H.G.	S.X.	Please select
0.51	72.3	GmaAffx.29525.1.S1_at	At3g57390	-	-	2e-8	At3g58560	endonuclease/exonuclease/phosphatase family protein	O.I.	H.G.	S.X.	Please select
0.49	68.3	Gma.2422.2.S1_at	At3g57390	-	-	1e-44	At5g05010	clathrin adaptor complexes medium subunit-related	O.I.	H.G.	S.X.	Please select
0.48	67.7	GmaAffx.83007.1.S1_at	At3g57390	-	-	7e-17	At3g02540	RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)	O.I.	H.G.	S.X.	Please select
0.47	66.6	GmaAffx.75484.1.S1_at	At3g57390	-	-	7e-5	At1g17370	UBP1B (oligouridylate binding protein 1B)	O.I.	H.G.	S.X.	Please select
0.46	65.5	GmaAffx.90621.1.S1_s_at	At3g57390	-	-	4e-50	At2g21270	ubiquitin fusion degradation UFD1 family protein	O.I.	H.G.	S.X.	Please select
0.46	65.5	GmaAffx.79358.1.S1_at	At3g57390	-	-	2e-8	At5g38830	tRNA synthetase class I (C) family protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	GmaAffx.76206.1.S1_at	At3g57390	-	-	5e-59	At1g71820	SEC6	O.I.	H.G.	S.X.	Please select
0.44	63.3	Gma.7498.3.S1_at	At3g57390	-	-	4e-71	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	O.I.	H.G.	S.X.	Please select
0.43	60.6	Gma.7498.2.S1_at	At3g57390	-	-	3e-7	At1g25490	RCN1 (ROOTS CURL IN NPA)	O.I.	H.G.	S.X.	Please select
0.43	60.6	GmaAffx.68394.1.S1_at	At3g57390	-	-	3e+0	At5g03660	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	60.6	GmaAffx.38941.1.S1_at	At3g57390	-	-	8e-1	At1g02330	-	O.I.	H.G.	S.X.	Please select
0.43	60.6	GmaAffx.46716.1.S1_at	At3g57390	-	-	2e-11	At3g03740	ATBPM4 (BTB-POZ and MATH domain 4)	O.I.	H.G.	S.X.	Please select
0.42	59.3	GmaAffx.29121.1.S1_at	At3g57390	-	-	1e+0	At4g17310	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	58.1	Gma.5135.2.S1_at	At3g57390	-	-	2e-42	At5g08500	transmembrane CLPTM1 family protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	GmaAffx.55872.1.S1_at	At3g57390	-	-	8e-1	At2g41120	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	GmaAffx.47629.1.S1_at	At3g57390	-	-	2e-67	At1g79940	ATERDJ2A	O.I.	H.G.	S.X.	Please select
0.39	54.5	Gma.4037.2.S1_s_at	At3g57390	-	-	1e-16	At1g09840	ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41)	O.I.	H.G.	S.X.	Please select
0.39	54.5	GmaAffx.43069.1.S1_at	At3g57390	-	-	4e-7	At1g14570	UBX domain-containing protein	O.I.	H.G.	S.X.	Please select
0.39	54.5	Gma.5989.2.S1_a_at	At3g57390	-	-	2e-23	At2g17390	AKR2B (ANKYRIN REPEAT-CONTAINING 2B)	O.I.	H.G.	S.X.	Please select
0.37	51.7	Gma.2892.2.S1_a_at	At3g57390	-	-	5e-47	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	O.I.	H.G.	S.X.	Please select
0.37	51.7	GmaAffx.91113.1.S1_s_at	At3g57390	-	-	1e-31	At4g23460	beta-adaptin, putative	O.I.	H.G.	S.X.	Please select
0.37	51.7	GmaAffx.478.5.S1_at	At3g57390	-	-	4e+0	At4g00467	-	O.I.	H.G.	S.X.	Please select
0.36	50.8	GmaAffx.55210.1.S1_at	At3g57390	-	-	5e-1	At1g08650	PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE)	O.I.	H.G.	S.X.	Please select
0.36	50.8	Gma.9706.3.S1_x_at	At3g57390	-	-	2e-5	At2g39840	TOPP4	O.I.	H.G.	S.X.	Please select
0.36	50.8	GmaAffx.84250.1.S1_at	At3g57390	SGT1-1	-	3e-1	At1g30110	ATNUDX25 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 25)	O.I.	H.G.	S.X.	Please select
0.36	50.8	GmaAffx.78964.1.S1_at	At3g57390	-	-	1e-3	At3g52660	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.31	42.2	GmaAffx.89525.1.S1_s_at	At3g57390	-	-	3e-26	At2g39840	TOPP4	O.I.	H.G.	S.X.	Please select
0.29	39.0	GmaAffx.15960.1.S1_at	At3g57390	-	-	3e-22	At4g01320	ATSTE24	O.I.	H.G.	S.X.	Please select
0.27	35.7	GmaAffx.40660.1.S1_at	At3g57390	-	-	5e-3	At5g25540	CID6 (CTC-Interacting Domain 6)	O.I.	H.G.	S.X.	Please select
0.20	25.1	Gma.9743.1.S1_at	At3g57390	-	-	8e-8	At5g61970	signal recognition particle-related / SRP-related	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage