CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.207643.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g57390: AGL18 (HF=3e-1)

Module size 6 genes

NF 0.38

%ile 64.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 86.0 0.90 PtpAffx.207643.1.S1_at pmrna15162 hypothetical protein - 3e-1 At3g57390 AGL18 O.I. H.G. S.X.
0.50 78.6 0.90 PtpAffx.9819.1.S1_at DN497878 - - 9e-1 At5g35737 unknown protein O.I. H.G. S.X.
0.46 73.7 0.90 PtpAffx.212939.1.S1_at pmrna25319 hypothetical protein - 2e-8 At5g07380 unknown protein O.I. H.G. S.X.
0.40 67.0 0.90 PtpAffx.202991.1.S1_at pmrna5919 hypothetical protein - 6e-1 At3g04510 LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2) O.I. H.G. S.X.
0.31 53.7 0.89 PtpAffx.116755.1.A1_at CK089718 - - 6e-1 At1g80160 lactoylglutathione lyase family protein / glyoxalase I family protein O.I. H.G. S.X.
0.19 32.7 0.89 PtpAffx.225864.1.S1_at pmrna45498 hypothetical protein - 1e+0 At4g16500 cysteine protease inhibitor family protein / cystatin family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.8 99.4 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
9.2 98.8 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.6 91.3 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.7 85.5 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.7 85.5 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g57390, orthologous to the query gene, PtpAffx.207643.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At3g57390 824906 AGL18 encodes a MADS-box containing protein likely to be a transcription factor that is expressed in endosperm and developing gametophytes. The protein sequence is most similar to that of AGL15, which is expressed in developing embryos. O.I. H.G. S.X.
0.33 38.1 At5g56640 835765 MIOX5 Myo-Inositol Oxygenase gene family O.I. H.G. S.X.
0.14 6.8 At3g51300 824293 ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1) Encodes a pollen-specific Rop GTPase, member of the Rho family of small GTP binding proteins that interacts with RIC3 and RIC4 to control tip growth in pollen tubes. These three proteins promote the proper targeting of exocytic vesicles in the pollen tube tip. ROP1 activity is regulated by the REN1 GTPase activator protein. O.I. H.G. S.X.
0.14 6.8 At4g27350 828843 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;BOPF O.I. H.G. S.X.
0.08 2.3 At4g05330 825881 AGD13 (ARF-GAP domain 13) A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. O.I. H.G. S.X.
0.08 2.3 At3g01630 819891 - F:unknown;P:unknown;C:unknown;PBOFAM O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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