Co-expression analysis

Gene ID PtpAffx.207643.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g57390: AGL18 (HF=3e-1)
Module size 6 genes
NF 0.38
%ile 64.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6086.00.90PtpAffx.207643.1.S1_atpmrna15162hypothetical protein-3e-1At3g57390AGL18O.I.H.G.S.X.
0.5078.60.90PtpAffx.9819.1.S1_atDN497878--9e-1At5g35737unknown proteinO.I.H.G.S.X.
0.4673.70.90PtpAffx.212939.1.S1_atpmrna25319hypothetical protein-2e-8At5g07380unknown proteinO.I.H.G.S.X.
0.4067.00.90PtpAffx.202991.1.S1_atpmrna5919hypothetical protein-6e-1At3g04510LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2)O.I.H.G.S.X.
0.3153.70.89PtpAffx.116755.1.A1_atCK089718--6e-1At1g80160lactoylglutathione lyase family protein / glyoxalase I family proteinO.I.H.G.S.X.
0.1932.70.89PtpAffx.225864.1.S1_atpmrna45498hypothetical protein-1e+0At4g16500cysteine protease inhibitor family protein / cystatin family proteinO.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.899.4GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
9.298.8GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.691.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g57390, orthologous to the query gene, PtpAffx.207643.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At3g57390824906AGL18encodes a MADS-box containing protein likely to be a transcription factor that is expressed in endosperm and developing gametophytes. The protein sequence is most similar to that of AGL15, which is expressed in developing embryos.O.I.H.G.S.X.
0.3338.1At5g56640835765MIOX5Myo-Inositol Oxygenase gene familyO.I.H.G.S.X.
0.146.8At3g51300824293ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1)Encodes a pollen-specific Rop GTPase, member of the Rho family of small GTP binding proteins that interacts with RIC3 and RIC4 to control tip growth in pollen tubes. These three proteins promote the proper targeting of exocytic vesicles in the pollen tube tip. ROP1 activity is regulated by the REN1 GTPase activator protein.O.I.H.G.S.X.
0.146.8At4g27350828843unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;BOPFO.I.H.G.S.X.
0.082.3At4g05330825881AGD13 (ARF-GAP domain 13)A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.

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