Co-expression analysis

Gene ID	PtpAffx.207591.1.S1_x_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g13850: GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2) (HF=6e-2)
Module size	6 genes
NF	0.35
%ile	60.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.92	PtpAffx.207591.1.S1_x_at	pmrna15065	hypothetical protein	-	6e-2	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.96	PtpAffx.207593.1.S1_x_at	pmrna15069	hypothetical protein	-	2e-2	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	0.93	PtpAffx.19128.1.S1_at	AJ779721	hypothetical protein	-	3e+0	At5g48420	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.97	PtpAffx.207593.1.S1_at	pmrna15069	hypothetical protein	-	2e-2	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.92	PtpAffx.215318.1.S1_s_at	pmrna29438	hypothetical protein	-	1e+0	At5g61660	glycine-rich protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.92	PtpAffx.210354.1.S1_at	pmrna20352	hypothetical protein	-	1e-5	At4g27590	copper-binding protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.8	98.9	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.5	97.1	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.0	95.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.3	93.7	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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