Co-expression analysis

Gene ID	PtpAffx.207493.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g17750: leucine-rich repeat transmembrane protein kinase, putative (HF=3e-5)
Module size	16 genes
NF	0.48
%ile	77.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	91.5	0.91	PtpAffx.207493.1.S1_at	pmrna14878	hypothetical protein	-	3e-5	At1g17750	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.92	PtpAffx.26445.1.S1_at	CK097103	-	-	4e-1	At2g15400	NRPE3B	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.69	91.5	0.94	PtpAffx.224552.1.S1_at	pmrna43190	hypothetical protein	-	1e-3	At1g56720	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.69	91.5	0.93	PtpAffx.28188.1.A1_at	CK095830	lysine/histidine transporter	-	3e-1	At3g23440	EDA6 (EMBRYO SAC DEVELOPMENT ARREST 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.93	PtpAffx.224889.1.S1_at	pmrna43797	hypothetical protein	-	4e+0	At5g34830	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.52	79.4	0.92	PtpAffx.62865.1.A1_at	CV275623	hypothetical protein	-	7e-1	At4g23270	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.94	PtpAffx.224553.1.S1_s_at	pmrna43191	hypothetical protein	-	3e-4	At1g56720	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.93	Ptp.3466.1.S1_at	BU887652	hypothetical protein	-	2e-6	At5g14940	proton-dependent oligopeptide transport (POT) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.94	Ptp.6562.1.S1_at	CK093623	-	-	2e+0	At5g56840	DNA-binding family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.95	PtpAffx.203517.1.S1_s_at	pmrna6989	hypothetical protein	-	2e-1	At3g49645	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.95	PtpAffx.220821.1.S1_s_at	pmrna37265	hypothetical protein	-	4e-9	At1g69730	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.92	PtpAffx.201699.1.S1_at	pmrna3388	autoinhibited calcium ATPase	-	2e-89	At3g63380	calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA12)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	0.94	Ptp.6947.1.S1_at	DN488701	hypothetical protein	-	1e-1	At2g28210	ATACA2 (ALPHA CARBONIC ANHYDRASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.93	PtpAffx.48228.1.A1_at	CV246219	hypothetical protein	-	5e-1	At3g05700	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.93	PtpAffx.218611.1.S1_at	pmrna34291	hypothetical protein	-	3e-1	At5g51100	FSD2 (FE SUPEROXIDE DISMUTASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.96	PtpAffx.153434.2.A1_at	CK094158	hypothetical protein	-	3e+0	At5g52975	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	96.8	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.7	85.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage