Co-expression analysis

Gene ID	PtpAffx.207438.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g42146: unknown protein (HF=3e-1)
Module size	12 genes
NF	0.51
%ile	82.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	83.9	0.92	PtpAffx.207438.1.S1_at	pmrna14771	hypothetical protein	-	3e-1	At5g42146	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.78	95.1	0.93	PtpAffx.145511.1.S1_at	BP927294	hypothetical protein	-	1e+0	At2g15490	UGT73B4 (UDP-GLYCOSYLTRANSFERASE 73B4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.70	91.7	0.94	PtpAffx.44290.1.A1_at	CV238019	hypothetical protein	-	3e-1	At2g29340	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.93	PtpAffx.32930.1.A1_at	CK095139	hypothetical protein	-	2e-1	At1g14185	glucose-methanol-choline (GMC) oxidoreductase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.58	84.2	0.94	PtpAffx.211742.1.S1_at	pmrna23011	hypothetical protein	-	2e-4	At4g16120	COBL7 (COBRA-LIKE 7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.58	84.2	0.95	PtpAffx.134772.1.S1_s_at	DN483641	ABC transporter family, retinal flippase subfamily	-	1e-3	At5g61690	ATATH15	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.93	PtpAffx.130922.1.S1_s_at	AJ773860	-	-	5e-6	At1g66950	PDR11 (PLEIOTROPIC DRUG RESISTANCE 11)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.94	PtpAffx.204500.1.S1_s_at	pmrna8828	lysine/histidine transporter /// lysine/histidine transporter	-	2e-7	At1g47670	amino acid transporter family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.94	PtpAffx.218018.1.S1_s_at	pmrna33518	flavonoid o-methyltransferase related /// flavonoid o-methyltransferase related	-	6e-4	At3g16780	60S ribosomal protein L19 (RPL19B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.93	PtpAffx.200436.1.S1_at	pmrna877	hypothetical protein	-	3e-2	At3g51970	AtSAT1 (Arabidopsis thaliana sterol O-acyltransferase 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.93	PtpAffx.202418.1.S1_at	pmrna4854	multidrug/pheromone exporter, MDR family, ABC transporter family	-	3e-24	At3g62150	PGP21 (P-GLYCOPROTEIN 21)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.94	PtpAffx.209542.1.S1_at	pmrna18907	hypothetical protein	-	5e-1	At2g32200	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.6	99.0	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
7.1	98.1	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
6.6	97.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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