Co-expression analysis

Gene ID PtpAffx.207436.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g10150: carbohydrate binding (HF=2e-4)
Module size 6 genes
NF 0.49
%ile 79.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5984.90.91PtpAffx.207436.1.S1_atpmrna14767hypothetical protein-2e-4At1g10150carbohydrate bindingO.I.H.G.S.X.
0.6388.10.91PtpAffx.216596.1.S1_atpmrna31485hypothetical protein-6e-4At4g31240-O.I.H.G.S.X.
0.4673.70.93PtpAffx.161907.1.A1_atCK094826hypothetical protein-9e-1At4g28025unknown proteinO.I.H.G.S.X.
0.4471.90.95PtpAffx.221030.1.S1_s_atpmrna37573hypothetical protein-4e-2At1g11250SYP125 (SYNTAXIN OF PLANTS 125)O.I.H.G.S.X.
0.4067.00.93PtpAffx.208131.1.S1_atpmrna16145hypothetical protein-3e-2At1g24040GCN5-related N-acetyltransferase (GNAT) family proteinO.I.H.G.S.X.
0.2238.30.93PtpAffx.119534.1.S1_atAJ773441peptide deformylase-5e-24At5g14660PDF1B (PEPTIDE DEFORMYLASE 1B)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.198.5GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.594.3GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.389.8GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.188.6GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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