Co-expression analysis

Gene ID	PtpAffx.207424.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g38090: unknown protein (HF=3e-23)
Module size	6 genes
NF	0.39
%ile	66.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.94	PtpAffx.207424.1.S1_at	pmrna14733	hypothetical protein	-	3e-23	At4g38090	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.94	PtpAffx.120026.2.S1_at	CX170140	hypothetical protein	-	1e+0	At5g02740	nucleotide binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.94	PtpAffx.157898.1.S1_at	DN494939	hypothetical protein	-	8e-21	At5g11580	UVB-resistance protein-related / regulator of chromosome condensation (RCC1) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.94	PtpAffx.207962.1.S1_at	pmrna15809	hypothetical protein	-	1e-13	At1g26180	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.94	PtpAffx.200384.1.S1_at	pmrna767	hypothetical protein	-	9e-26	At4g11110	SPA2 (SPA1-RELATED 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.94	Ptp.5807.1.A1_at	CV243181	hypothetical protein	-	6e-18	At3g02770	dimethylmenaquinone methyltransferase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.5	99.0	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.8	96.4	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.5	94.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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