Co-expression analysis

Gene ID PtpAffx.207398.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g45160: unknown protein (HF=2e-2)
Module size 8 genes
NF 0.17
%ile 32.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4774.60.84PtpAffx.207398.1.S1_atpmrna14680hypothetical protein-2e-2At3g45160unknown proteinO.I.H.G.S.X.
0.3863.70.85Ptp.1794.2.A1_atCK092692--3e+0At3g27890NQR (NADPH:QUINONE OXIDOREDUCTASE)O.I.H.G.S.X.
0.2238.30.87PtpAffx.215627.1.S1_atpmrna29919hypothetical protein-2e+0At3g63050unknown proteinO.I.H.G.S.X.
0.2034.60.85PtpAffx.78180.1.S1_atCB239355--2e+0At1g62850-O.I.H.G.S.X.
0.2034.60.87PtpAffx.47728.1.S1_atBI125402--2e-1At5g37930seven in absentia (SINA) family proteinO.I.H.G.S.X.
0.1830.80.85PtpAffx.200892.1.S1_x_atpmrna1753--9e-22Atcg01050-O.I.H.G.S.X.
0.1118.10.85PtpAffx.37301.1.A1_atCV257142hypothetical protein-2e-21At5g10940transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.1016.30.85PtpAffx.206323.1.S1_atpmrna12555hypothetical protein-1e-3At5g67060HEC1 (HECATE 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.298.1GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.296.8GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.794.7GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.691.3GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.088.0GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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