CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.207242.1.S1_s_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At4g35470: leucine-rich repeat family protein (HF=2e-20)

Module size 6 genes

NF 0.42

%ile 70.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 0.94 PtpAffx.207242.1.S1_s_at pmrna14353 hypothetical protein - 2e-20 At4g35470 leucine-rich repeat family protein O.I. H.G. S.X.
0.55 82.2 0.94 PtpAffx.205481.1.S1_x_at pmrna10842 hypothetical protein - 5e-1 At5g17450 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related O.I. H.G. S.X.
0.44 71.9 0.93 PtpAffx.207242.1.S1_at pmrna14353 hypothetical protein - 2e-20 At4g35470 leucine-rich repeat family protein O.I. H.G. S.X.
0.36 61.6 0.94 PtpAffx.31782.2.A1_a_at CV272415 gtp-binding protein SAR1 - 4e-47 At1g09180 ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1) O.I. H.G. S.X.
0.25 43.6 0.94 PtpAffx.11623.1.A1_at CV260515 hypothetical protein - 8e-25 At5g09850 transcription elongation factor-related O.I. H.G. S.X.
0.22 38.3 0.94 PtpAffx.82259.1.A1_s_at CV254342 hypothetical protein - 4e-50 At1g20880 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.3 96.9 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.0 95.3 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.6 94.5 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM244430 non infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4 90.4 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere

Inter-species module comparison

A co-expression module including the maize gene, Zm.428.1.S1_at, orthologous to the query gene, PtpAffx.207242.1.S1_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 81.1 Zm.428.1.S1_at At4g35470 hypothetical protein LOC100191335 - 8e-16 At5g17770 ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1) O.I. H.G. S.X.
0.55 71.6 Zm.17580.1.S1_at At4g35470 - - 2e+0 At2g48070 RPH1 (RESISTANCE TO PHYTOPHTHORA 1) O.I. H.G. S.X.
0.47 59.9 Zm.6455.1.A1_at At4g35470 - - 3e-17 At3g63280 ATNEK4 (NIMA-RELATED KINASE 4) O.I. H.G. S.X.
0.35 38.9 Zm.1712.1.A1_at At4g35470 TBC domain containing protein - 8e-5 At5g54780 RAB GTPase activator O.I. H.G. S.X.
0.26 22.7 Zm.11606.1.S1_at At4g35470 - - 8e-2 At3g09922 IPS1 (INDUCED BY PHOSPHATE STARVATION1) O.I. H.G. S.X.
0.25 21.3 Zm.4560.2.S1_at At4g35470 - - 2e-11 At3g59350 serine/threonine protein kinase, putative O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera

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