| Gene ID | PtpAffx.207242.1.S1_s_at |
| Gene name | hypothetical protein |
| Homology with Arabidopsis | Similar to At4g35470: leucine-rich repeat family protein (HF=2e-20) |
| Module size | 6 genes |
| NF | 0.42 |
| %ile | 70.4 |
| VF | %ile | CC | Gene ID | Repr. ID | Gene name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.67 | 91.1 | 0.94 | PtpAffx.207242.1.S1_s_at | pmrna14353 | hypothetical protein | - | 2e-20 | At4g35470 | leucine-rich repeat family protein | O.I. | H.G. | S.X. | |
| 0.55 | 82.2 | 0.94 | PtpAffx.205481.1.S1_x_at | pmrna10842 | hypothetical protein | - | 5e-1 | At5g17450 | heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related | O.I. | H.G. | S.X. | |
| 0.44 | 71.9 | 0.93 | PtpAffx.207242.1.S1_at | pmrna14353 | hypothetical protein | - | 2e-20 | At4g35470 | leucine-rich repeat family protein | O.I. | H.G. | S.X. | |
| 0.36 | 61.6 | 0.94 | PtpAffx.31782.2.A1_a_at | CV272415 | gtp-binding protein SAR1 | - | 4e-47 | At1g09180 | ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1) | O.I. | H.G. | S.X. | |
| 0.25 | 43.6 | 0.94 | PtpAffx.11623.1.A1_at | CV260515 | hypothetical protein | - | 8e-25 | At5g09850 | transcription elongation factor-related | O.I. | H.G. | S.X. | |
| 0.22 | 38.3 | 0.94 | PtpAffx.82259.1.A1_s_at | CV254342 | hypothetical protein | - | 4e-50 | At1g20880 | RNA recognition motif (RRM)-containing protein | O.I. | H.G. | S.X. |
| Std2 GX | %ile | GSM ID | Assay name | GSE ID | Experiment title | Link to GEO |
|---|---|---|---|---|---|---|
| 5.3 | 96.9 | GSM136936 | Poplar in 1 x hrp + 0.25 % sucrose no bacteria | GSE5887 | Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere | |
| 4.0 | 95.3 | GSM328532 | Populus x canescens root hypoxia_rep_02 | GSE13109 | Effect of hypoxia on gene expression in Grey poplar | |
| 3.8 | 94.9 | GSM328533 | Populus x canescens root hypoxia_rep_03 | GSE13109 | Effect of hypoxia on gene expression in Grey poplar | |
| 3.6 | 94.5 | GSM328484 | Populus x canescens root hypoxia_rep_01 | GSE13109 | Effect of hypoxia on gene expression in Grey poplar | |
| 2.9 | 92.5 | GSM328567 | Populus x canescens root hypoxia_rep_09 | GSE13109 | Effect of hypoxia on gene expression in Grey poplar | |
| 2.4 | 90.4 | GSM328564 | Populus x canescens root hypoxia_rep_06 | GSE13109 | Effect of hypoxia on gene expression in Grey poplar | |
| 2.4 | 90.4 | GSM244430 | non infected tissue, biological rep1 | GSE9673 | Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi | |
| 2.4 | 90.4 | GSM327411 | Populus balsamifera_1006_differentiating_xylem_midday_1 | GSE13990 | Populus balsamifera developmental tissue series | |
| 2.3 | 89.8 | GSM328562 | Populus x canescens root hypoxia_rep_04 | GSE13109 | Effect of hypoxia on gene expression in Grey poplar | |
| 2.1 | 88.6 | GSM136938 | Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose | GSE5887 | Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere | |
| VF | %ile | Gene ID | Repr. ID | Gene Name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.96 | 99.7 | Os08g0511700 | At4g35470 | - | Leucine-rich repeat, typical subtype containingprotein | 2e-4 | At4g35470 | leucine-rich repeat family protein | O.I. | H.G. | S.X. | |
| 0.40 | 51.1 | Os10g0488800 | At4g35470 | - | Myosin head, motor region domain containingprotein | 6e-53 | At1g50360 | VIIIA | O.I. | H.G. | S.X. | |
| 0.29 | 31.1 | Os04g0562000 | At4g35470 | - | Zn-finger, DHHC type domain containing protein | 5e-11 | At3g51390 | zinc finger (DHHC type) family protein | O.I. | H.G. | S.X. | |
| 0.20 | 16.5 | Os07g0138100 | At4g35470 | - | Pleckstrin-like domain containing protein | 6e-5 | At2g30880 | pleckstrin homology (PH) domain-containing protein | O.I. | H.G. | S.X. | |
| 0.18 | 13.7 | Os04g0510300 | At4g35470 | - | The start codon is not identified. | 6e-4 | At2g32700 | WD-40 repeat family protein | O.I. | H.G. | S.X. | |
| 0.15 | 10.3 | Os03g0126100 | At4g35470 | - | C-terminal binding protein | 3e-46 | At1g01510 | AN (ANGUSTIFOLIA) | O.I. | H.G. | S.X. | |
| 0.14 | 9.3 | Os04g0479100 | At4g35470 | - | Conserved hypothetical protein | 1e+0 | At3g55646 | unknown protein | O.I. | H.G. | S.X. | |
| 0.12 | 7.2 | Os10g0423000 | At4g35470 | - | Conserved hypothetical protein | 7e-2 | At4g08400 | proline-rich extensin-like family protein | O.I. | H.G. | S.X. | |
| 0.12 | 7.2 | Os12g0163400 | At4g35470 | - | Tubby family protein | 1e-6 | At1g25280 | AtTLP10 (TUBBY LIKE PROTEIN 10) | O.I. | H.G. | S.X. | |
| 0.11 | 6.5 | Os05g0149800 | At4g35470 | - | Calcium-binding EF-hand domain containing protein | 4e-77 | At5g18580 | FASS (FASS 1) | O.I. | H.G. | S.X. | |
| 0.06 | 3.0 | Os11g0533500 | At4g35470 | - | Retinoblastoma-related protein 2b (Fragment) | 3e-2 | At3g12280 | RBR1 (RETINOBLASTOMA-RELATED 1) | O.I. | H.G. | S.X. | |
| 0.06 | 3.0 | Os07g0673500 | At4g35470 | - | - | 7e-11 | At3g49430 | SRp34a (Ser/Arg-rich protein 34a) | O.I. | H.G. | S.X. |
| Arabidopsis_thaliana |
| Glycine_max |
| Hordeum_vulgare |
| Triticum_aestivum |
| Vitis_vinifera |
| Zea_mays |
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