Co-expression analysis

Gene ID PtpAffx.207242.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g35470: leucine-rich repeat family protein (HF=2e-20)
Module size 6 genes
NF 0.42
%ile 70.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.94PtpAffx.207242.1.S1_s_atpmrna14353hypothetical protein-2e-20At4g35470leucine-rich repeat family proteinO.I.H.G.S.X.
0.5582.20.94PtpAffx.205481.1.S1_x_atpmrna10842hypothetical protein-5e-1At5g17450heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedO.I.H.G.S.X.
0.4471.90.93PtpAffx.207242.1.S1_atpmrna14353hypothetical protein-2e-20At4g35470leucine-rich repeat family proteinO.I.H.G.S.X.
0.3661.60.94PtpAffx.31782.2.A1_a_atCV272415gtp-binding protein SAR1-4e-47At1g09180ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1)O.I.H.G.S.X.
0.2543.60.94PtpAffx.11623.1.A1_atCV260515hypothetical protein-8e-25At5g09850transcription elongation factor-relatedO.I.H.G.S.X.
0.2238.30.94PtpAffx.82259.1.A1_s_atCV254342hypothetical protein-4e-50At1g20880RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.396.9GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
4.095.3GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.894.9GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.694.5GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.992.5GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.490.4GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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