Co-expression analysis

Gene ID PtpAffx.207242.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g35470: leucine-rich repeat family protein (HF=2e-20)
Module size 6 genes
NF 0.53
%ile 83.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6388.10.94PtpAffx.207242.1.S1_atpmrna14353hypothetical protein-2e-20At4g35470leucine-rich repeat family proteinO.I.H.G.S.X.
0.5582.20.94PtpAffx.31782.2.A1_a_atCV272415gtp-binding protein SAR1-4e-47At1g09180ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1)O.I.H.G.S.X.
0.4673.70.94PtpAffx.132883.1.S1_atBI072375hypothetical protein-2e-1At4g10430-O.I.H.G.S.X.
0.4471.90.94PtpAffx.218771.1.S1_s_atpmrna34498jumonji domain protein /// hypothetical protein-5e-26At1g30810transcription factorO.I.H.G.S.X.
0.4067.00.94PtpAffx.207242.1.S1_s_atpmrna14353hypothetical protein-2e-20At4g35470leucine-rich repeat family proteinO.I.H.G.S.X.
0.3661.60.94PtpAffx.205481.1.S1_x_atpmrna10842hypothetical protein-5e-1At5g17450heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5380.50.91PtpAffx.210142.1.S1_atpmrna19985jumonji domain protein-1e-18At1g30810transcription factorO.I.H.G.S.X.
0.4471.90.89PtpAffx.27102.2.S1_atAJ780055hypothetical protein-3e-14At4g34200EDA9 (embryo sac development arrest 9)O.I.H.G.S.X.
0.4471.90.94PtpAffx.35909.1.S1_atCV244075hypothetical protein-3e-2At3g55970oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.4369.70.88PtpAffx.206973.1.S1_atpmrna13820hypothetical protein-1e+0At3g25040ER lumen protein retaining receptor, putative / HDEL receptor, putativeO.I.H.G.S.X.
0.3863.70.89PtpAffx.209417.1.S1_atpmrna18650hypothetical protein-8e-19At3g09830protein kinase, putativeO.I.H.G.S.X.
0.3863.70.90Ptp.7114.1.S1_s_atCN519728hypothetical protein-2e-46At1g08570ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4)O.I.H.G.S.X.
0.3661.60.89PtpAffx.217955.1.S1_atpmrna33430hypothetical protein-6e-4At1g76890-O.I.H.G.S.X.
0.3661.60.89Ptp.1251.1.A1_s_atCV239468hypothetical protein-8e-3At5g47390myb family transcription factorO.I.H.G.S.X.
0.3661.60.91PtpAffx.153242.1.S1_s_atCV264777hypothetical protein-6e-25At3g10920MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1)O.I.H.G.S.X.
0.3661.60.92PtpAffx.134252.1.A1_atCV242320hypothetical protein-7e-29At1g31230AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I)O.I.H.G.S.X.
0.3458.30.80PtpAffx.203412.1.S1_atpmrna6787hypothetical protein-8e-4At1g32510anac011 (Arabidopsis NAC domain containing protein 11)O.I.H.G.S.X.
0.3357.50.87PtpAffx.212200.1.S1_x_atpmrna23915hypothetical protein-5e-2At2g16890UDP-glucoronosyl/UDP-glucosyl transferase family proteinO.I.H.G.S.X.
0.3357.50.92PtpAffx.148855.1.S1_s_atCF229164hypothetical protein-9e-2At5g40530-O.I.H.G.S.X.
0.3255.20.89PtpAffx.206318.1.S1_x_atpmrna12544hypothetical protein-5e-1At5g01380transcription factorO.I.H.G.S.X.
0.3255.20.92Ptp.5817.1.S1_atAJ776993hypothetical protein-3e-18At3g48530KING1 (SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1)O.I.H.G.S.X.
0.3052.00.90Ptp.494.1.S1_s_atCV271388hypothetical protein-2e-4At1g18300atnudt4 (Arabidopsis thaliana Nudix hydrolase homolog 4)O.I.H.G.S.X.
0.3052.00.90PtpAffx.5219.1.A1_s_atCN523722hypothetical protein-5e-13At4g29220PFK1 (PHOSPHOFRUCTOKINASE 1)O.I.H.G.S.X.
0.2950.50.88Ptp.4187.1.S1_atCA930797hypothetical protein-2e-9At1g0740017.8 kDa class I heat shock protein (HSP17.8-CI)O.I.H.G.S.X.
0.2950.50.90PtpAffx.208750.1.S1_atpmrna17350hypothetical protein-1e-55At1g04200unknown proteinO.I.H.G.S.X.
0.2950.50.91PtpAffx.105190.1.S1_atCF227533hypothetical protein-3e-26At2g15910CSL zinc finger domain-containing proteinO.I.H.G.S.X.
0.2850.50.83PtpAffx.200563.1.S1_atpmrna1114hypothetical protein-7e-2At5g27420zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2747.10.86PtpAffx.218289.1.S1_atpmrna33846hypothetical protein-3e-4At5g53310myosin heavy chain-relatedO.I.H.G.S.X.
0.2747.10.91PtpAffx.205481.1.S1_atpmrna10842hypothetical protein-5e-1At5g17450heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedO.I.H.G.S.X.
0.2747.10.92Ptp.3127.1.S1_s_atAJ777838hypothetical protein-3e-52At4g26270PFK3 (PHOSPHOFRUCTOKINASE 3)O.I.H.G.S.X.
0.2747.10.92Ptp.7478.1.S1_atBU866961hypothetical protein-2e-3At5g02220unknown proteinO.I.H.G.S.X.
0.2645.20.90PtpAffx.15038.4.S1_atCV258926hypothetical protein-4e+0At5g44920Toll-Interleukin-Resistance (TIR) domain-containing proteinO.I.H.G.S.X.
0.2645.20.89PtpAffx.203341.1.S1_s_atpmrna6649AP2/ERF domain-containing transcription factor-3e-7At5g47220ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)O.I.H.G.S.X.
0.2543.60.90PtpAffx.9204.1.S1_atCV273021--1e-5At3g21220ATMKK5 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5)O.I.H.G.S.X.
0.2543.60.93PtpAffx.85773.1.S1_atCK107579white-brown-complex ABC transporter family-6e-17At1g53390ATPase, coupled to transmembrane movement of substancesO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.597.1GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
5.396.9GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.696.2GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.596.1GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.195.5GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.694.5GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.594.3GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.494.0GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.092.9GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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