Co-expression analysis

Gene ID PtpAffx.207242.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g35470: leucine-rich repeat family protein (HF=2e-20)
Module size 6 genes
NF 0.53
%ile 83.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6388.10.94PtpAffx.207242.1.S1_atpmrna14353hypothetical protein-2e-20At4g35470leucine-rich repeat family proteinO.I.H.G.S.X.
0.5582.20.94PtpAffx.31782.2.A1_a_atCV272415gtp-binding protein SAR1-4e-47At1g09180ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1)O.I.H.G.S.X.
0.4673.70.94PtpAffx.132883.1.S1_atBI072375hypothetical protein-2e-1At4g10430-O.I.H.G.S.X.
0.4471.90.94PtpAffx.218771.1.S1_s_atpmrna34498jumonji domain protein /// hypothetical protein-5e-26At1g30810transcription factorO.I.H.G.S.X.
0.4067.00.94PtpAffx.207242.1.S1_s_atpmrna14353hypothetical protein-2e-20At4g35470leucine-rich repeat family proteinO.I.H.G.S.X.
0.3661.60.94PtpAffx.205481.1.S1_x_atpmrna10842hypothetical protein-5e-1At5g17450heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.597.1GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
5.396.9GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.696.2GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.596.1GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.195.5GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.694.5GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.594.3GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.494.0GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.092.9GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.428.1.S1_at, orthologous to the query gene, PtpAffx.207242.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6381.1Zm.428.1.S1_atAt4g35470hypothetical protein LOC100191335-8e-16At5g17770ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)O.I.H.G.S.X.
0.5571.6Zm.17580.1.S1_atAt4g35470--2e+0At2g48070RPH1 (RESISTANCE TO PHYTOPHTHORA 1)O.I.H.G.S.X.
0.4759.9Zm.6455.1.A1_atAt4g35470--3e-17At3g63280ATNEK4 (NIMA-RELATED KINASE 4)O.I.H.G.S.X.
0.3538.9Zm.1712.1.A1_atAt4g35470TBC domain containing protein-8e-5At5g54780RAB GTPase activatorO.I.H.G.S.X.
0.2622.7Zm.11606.1.S1_atAt4g35470--8e-2At3g09922IPS1 (INDUCED BY PHOSPHATE STARVATION1)O.I.H.G.S.X.
0.2521.3Zm.4560.2.S1_atAt4g35470--2e-11At3g59350serine/threonine protein kinase, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera



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