Co-expression analysis

Gene ID	PtpAffx.207242.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g35470: leucine-rich repeat family protein (HF=2e-20)
Module size	6 genes
NF	0.53
%ile	83.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	88.1	0.94	PtpAffx.207242.1.S1_at	pmrna14353	hypothetical protein	-	2e-20	At4g35470	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.94	PtpAffx.31782.2.A1_a_at	CV272415	gtp-binding protein SAR1	-	4e-47	At1g09180	ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.94	PtpAffx.132883.1.S1_at	BI072375	hypothetical protein	-	2e-1	At4g10430	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.94	PtpAffx.218771.1.S1_s_at	pmrna34498	jumonji domain protein /// hypothetical protein	-	5e-26	At1g30810	transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.94	PtpAffx.207242.1.S1_s_at	pmrna14353	hypothetical protein	-	2e-20	At4g35470	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.94	PtpAffx.205481.1.S1_x_at	pmrna10842	hypothetical protein	-	5e-1	At5g17450	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.5	97.1	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.3	96.9	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.6	96.2	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.5	96.1	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.6	94.5	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the grape gene, 1622003_at, orthologous to the query gene, PtpAffx.207242.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	79.4	1622003_at	At4g35470	hypothetical protein LOC100251511	-	3e-1	At3g15357	unknown protein	O.I.	H.G.	S.X.	Please select
0.79	92.7	1621138_at	At4g35470	-	-	2e+1	At5g29000	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.65	85.0	1614442_at	At4g35470	hypothetical protein LOC100253371	-	7e-6	At1g12830	unknown protein	O.I.	H.G.	S.X.	Please select
0.64	84.7	1618654_at	At4g35470	hypothetical protein LOC100259649	-	9e-1	At4g04614	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	83.2	1621815_at	At4g35470	hypothetical protein LOC100261110	-	1e+0	At1g12630	DNA binding / transcription activator/ transcription factor	O.I.	H.G.	S.X.	Please select
0.58	79.8	1607019_at	At4g35470	hypothetical protein LOC100251940	-	3e+0	At2g41420	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.56	79.4	1619789_at	At4g35470	hypothetical protein LOC100244542	-	4e+0	At2g26040	Bet v I allergen family protein	O.I.	H.G.	S.X.	Please select
0.53	75.2	1617668_at	At4g35470	hypothetical protein LOC100243346	-	5e-4	At4g11080	high mobility group (HMG1/2) family protein	O.I.	H.G.	S.X.	Please select
0.52	73.9	1610096_at	At4g35470	hypothetical protein LOC100267358	-	1e-43	At5g59970	histone H4	O.I.	H.G.	S.X.	Please select
0.50	72.7	1615796_at	At4g35470	-	-	2e+0	At5g42785	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	68.8	1619323_at	At4g35470	hypothetical protein LOC100264304	-	7e+0	At5g37780	CAM1 (CALMODULIN 1)	O.I.	H.G.	S.X.	Please select
0.48	68.8	1607792_at	At4g35470	hypothetical protein LOC100250805	-	1e+0	At1g10717	-	O.I.	H.G.	S.X.	Please select
0.42	60.1	1614831_at	At4g35470	hypothetical protein LOC100243109	-	7e-8	At5g48600	ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3)	O.I.	H.G.	S.X.	Please select
0.41	58.7	1614219_at	At4g35470	similar to predicted protein	-	3e-47	At5g10400	histone H3	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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