Co-expression analysis

Gene ID PtpAffx.207242.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g35470: leucine-rich repeat family protein (HF=2e-20)
Module size 6 genes
NF 0.53
%ile 83.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6388.10.94PtpAffx.207242.1.S1_atpmrna14353hypothetical protein-2e-20At4g35470leucine-rich repeat family proteinO.I.H.G.S.X.
0.5582.20.94PtpAffx.31782.2.A1_a_atCV272415gtp-binding protein SAR1-4e-47At1g09180ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1)O.I.H.G.S.X.
0.4673.70.94PtpAffx.132883.1.S1_atBI072375hypothetical protein-2e-1At4g10430-O.I.H.G.S.X.
0.4471.90.94PtpAffx.218771.1.S1_s_atpmrna34498jumonji domain protein /// hypothetical protein-5e-26At1g30810transcription factorO.I.H.G.S.X.
0.4067.00.94PtpAffx.207242.1.S1_s_atpmrna14353hypothetical protein-2e-20At4g35470leucine-rich repeat family proteinO.I.H.G.S.X.
0.3661.60.94PtpAffx.205481.1.S1_x_atpmrna10842hypothetical protein-5e-1At5g17450heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.597.1GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
5.396.9GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.696.2GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.596.1GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.195.5GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.694.5GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.594.3GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.494.0GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.092.9GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.46385.2.S1_at, orthologous to the query gene, PtpAffx.207242.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9298.9GmaAffx.46385.2.S1_atAt4g35470--4e-28At4g35470leucine-rich repeat family proteinO.I.H.G.S.X.
0.1923.7Gma.520.1.S1_atAt4g35470small GTP-binding protein-5e-50At5g65270AtRABA4a (Arabidopsis Rab GTPase homolog A4a)O.I.H.G.S.X.
0.1923.7Gma.8102.3.S1_atAt4g35470--4e-6At2g26510PDE135 (pigment defective embryo 135)O.I.H.G.S.X.
0.1013.0Gma.8009.2.S1_atAt4g35470--5e-31At2g38610KH domain-containing proteinO.I.H.G.S.X.
0.0811.0Gma.7528.2.S1_atAt4g35470--3e-49At4g16143IMPA-2 (IMPORTIN ALPHA ISOFORM 2)O.I.H.G.S.X.
0.0710.2Gma.6554.1.S1_atAt4g35470--5e-6At2g46080-O.I.H.G.S.X.
0.035.8GmaAffx.72999.1.S1_atAt4g35470--1e-12At4g39170SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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