Co-expression analysis

Gene ID	PtpAffx.206972.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g49150: GEX2 (GAMETE EXPRESSED 2) (HF=6e-2)
Module size	6 genes
NF	0.41
%ile	68.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	93.6	0.87	PtpAffx.206972.1.S1_at	pmrna13819	hypothetical protein	-	6e-2	At5g49150	GEX2 (GAMETE EXPRESSED 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.86	PtpAffx.201597.1.S1_at	pmrna3143	hypothetical protein	-	2e-27	At1g75820	CLV1 (CLAVATA 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.86	PtpAffx.204061.1.S1_at	pmrna8008	hypothetical protein	-	2e+0	At3g26510	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.87	PtpAffx.73999.1.S1_at	BU870918	-	-	2e+0	At5g03995	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.87	PtpAffx.212467.1.S1_x_at	pmrna24427	hypothetical protein	-	4e-1	At5g26220	ChaC-like family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.86	PtpAffx.216632.1.S1_at	pmrna31543	hypothetical protein	-	2e+1	At3g30222	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.9	99.2	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
6.4	97.7	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.3	93.7	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327359	Populus balsamifera_20071015_Seedling_continuous_light_6d_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5	90.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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