Co-expression analysis

Gene ID	PtpAffx.20696.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g65690: harpin-induced protein-related / HIN1-related / harpin-responsive protein-related (HF=4e-5)
Module size	10 genes
NF	0.69
%ile	95.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.94	PtpAffx.20696.1.S1_at	CX654772	-	-	4e-5	At1g65690	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.86	97.4	0.95	PtpAffx.99394.1.S1_at	CX176480	hypothetical protein	-	1e-18	At4g24290	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.82	96.3	0.96	PtpAffx.208739.1.S1_s_at	pmrna17329	hypothetical protein	-	2e-1	At1g66460	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	0.95	PtpAffx.10261.2.A1_at	CV253181	hypothetical protein	-	6e-4	At4g15120	VQ motif-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.95	Ptp.5910.1.S1_at	AJ770523	aminophospholipid ATPase	-	2e-3	At1g68710	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.95	PtpAffx.154542.2.S1_at	AJ771909	hypothetical protein	-	1e-16	At1g54320	LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.96	PtpAffx.97764.1.S1_at	CB240411	hypothetical protein	-	1e-38	At2g33120	SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.97	PtpAffx.417.3.A1_a_at	CV259584	cytochrome P450 /// cytochrome P450 /// hypothetical protein	-	3e-1	At3g44970	cytochrome P450 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	PtpAffx.56650.1.A1_s_at	CA823086	cytochrome P450	-	3e-2	At5g36220	CYP81D1 (CYTOCHROME P450 81D1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.96	PtpAffx.12059.1.S1_at	CA927399	hypothetical protein	-	4e-31	At3g01420	DOX1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.0	96.6	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.9	92.5	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.6	91.3	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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