Co-expression analysis

Gene ID	PtpAffx.206937.1.S1_x_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g20320: TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2) (HF=2e-71)
Module size	10 genes
NF	0.52
%ile	83.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.78	95.1	0.95	PtpAffx.206937.1.S1_x_at	pmrna13762	hypothetical protein	-	2e-71	At3g20320	TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.96	PtpAffx.202423.1.S1_at	pmrna4863	hypothetical protein	-	8e-78	At4g01690	PPOX	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	0.95	PtpAffx.129242.1.S1_a_at	BU878116	hypothetical protein	-	3e-10	At3g17800	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.96	PtpAffx.210579.1.S1_at	pmrna20748	hypothetical protein	-	3e-39	At5g17990	TRP1 (tryptophan biosynthesis 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.95	PtpAffx.5329.2.A1_s_at	CV269342	hypothetical protein	-	6e-6	At3g09860	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.96	PtpAffx.211801.1.S1_at	pmrna23142	hypothetical protein	-	3e-62	At4g02990	mitochondrial transcription termination factor family protein / mTERF family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.96	PtpAffx.214213.1.S1_at	pmrna27657	hypothetical protein	-	9e-50	At2g31170	SYCO ARATH	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.96	PtpAffx.202380.1.S1_s_at	pmrna4781	hypothetical protein	-	1e-159	At1g02560	CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.96	PtpAffx.63964.1.S1_at	AJ779357	hypothetical protein	-	2e+0	At1g52220	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	0.96	Ptp.1960.1.A1_s_at	CV256030	predicted membrane protein	-	2e-40	At4g13590	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.0	97.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM327359	Populus balsamifera_20071015_Seedling_continuous_light_6d_3	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.5	83.5	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
1.4	82.3	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.4	82.3	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.4	82.3	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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