Co-expression analysis

Gene ID PtpAffx.206881.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g07870: protein kinase family protein (HF=4e-2)
Module size 14 genes
NF 0.14
%ile 28.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9699.80.84PtpAffx.206881.1.S1_atpmrna13663hypothetical protein-4e-2At1g07870protein kinase family proteinO.I.H.G.S.X.
0.3052.00.96PtpAffx.16432.1.S1_a_atDN485066hypothetical protein-3e-8At3g24010ING1 (INHIBITOR OF GROWTH 1)O.I.H.G.S.X.
0.2543.60.96PtpAffx.5311.1.S1_atCV253617hypothetical protein-7e-31At2g18600RUB1-conjugating enzyme, putativeO.I.H.G.S.X.
0.2441.80.94PtpAffx.50217.1.A1_atCV255961hypothetical protein-2e-5At3g57890tubulin-specific chaperone C-relatedO.I.H.G.S.X.
0.2238.30.94PtpAffx.69764.2.A1_atCV265274hypothetical protein-6e-6At5g15400U-box domain-containing proteinO.I.H.G.S.X.
0.2136.50.93PtpAffx.21365.1.S1_atDN491950hypothetical protein-2e+0At3g57062unknown proteinO.I.H.G.S.X.
0.1932.70.94Ptp.1879.1.S1_s_atCV262157hypothetical protein-2e-3At1g48440unknown proteinO.I.H.G.S.X.
0.1626.90.93PtpAffx.38108.1.A1_atCV225915glycosyl transferase-9e-1At4g01230reticulon family protein (RTNLB7)O.I.H.G.S.X.
0.1525.30.94Ptp.2112.1.S1_atCV273029hypothetical protein-8e-31At2g22370unknown proteinO.I.H.G.S.X.
0.1525.30.94PtpAffx.28816.2.A1_a_atCV241064hypothetical protein-2e+0At5g14710-O.I.H.G.S.X.
0.1118.10.95Ptp.2166.1.S1_s_atCV244136hypothetical protein-5e-54At5g13430ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putativeO.I.H.G.S.X.
0.0711.60.94PtpAffx.212730.1.S1_atpmrna24902hypothetical protein-2e-12At3g47940DNAJ heat shock protein, putativeO.I.H.G.S.X.
0.069.80.93PtpAffx.50674.1.A1_a_atCV264554hypothetical protein-3e-51At2g25950unknown proteinO.I.H.G.S.X.
0.058.30.94PtpAffx.249.859.A1_atCV276451--4e-43At5g03240UBQ3 (POLYUBIQUITIN 3)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.195.5GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.894.9GSM328274Populus x canescens leaf hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.494.0GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.293.5GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
3.092.9GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM372043Clone1979_LPI5_N-_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.691.3GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.289.3GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.188.6GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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