Co-expression analysis

Gene ID	PtpAffx.206787.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g11440: - (HF=7e-2)
Module size	6 genes
NF	0.30
%ile	53.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	73.7	0.85	PtpAffx.206787.1.S1_at	pmrna13472	hypothetical protein	-	7e-2	At1g11440	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.84	PtpAffx.120602.1.A1_at	CV272515	-	-	1e+0	At4g21200	GA2OX8 (GIBBERELLIN 2-OXIDASE 8)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.85	PtpAffx.203463.1.S1_at	pmrna6897	autoinhibited H+ ATPase	-	1e-44	At3g42640	AHA8 (Arabidopsis H(+)-ATPase 8)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.85	PtpAffx.223223.1.S1_at	pmrna41102	-	-	5e-4	At1g48210	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.88	PtpAffx.147823.2.A1_at	CV227944	hypothetical protein	-	8e-2	At4g29130	HXK1 (HEXOKINASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.84	PtpAffx.224791.1.S1_s_at	pmrna43641	hypothetical protein	-	3e-3	At5g44390	FAD-binding domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.0	97.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.8	96.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.5	90.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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