Co-expression analysis

Gene ID PtpAffx.206781.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g32400: SHS1 (SODIUM HYPERSENSITIVE 1) (HF=3e-18)
Module size 28 genes
NF 0.31
%ile 54.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8997.80.91PtpAffx.206781.1.S1_s_atpmrna13465hypothetical protein-3e-18At4g32400SHS1 (SODIUM HYPERSENSITIVE 1)O.I.H.G.S.X.
0.5178.90.94PtpAffx.219045.1.S1_s_atpmrna34843hypothetical protein-6e-54At3g16630KINESIN-13AO.I.H.G.S.X.
0.3964.60.95PtpAffx.40192.1.A1_s_atCV264380hypothetical protein-2e+0At3g17020universal stress protein (USP) family proteinO.I.H.G.S.X.
0.3964.60.95PtpAffx.206670.1.S1_atpmrna13238hypothetical protein-4e-11At5g56450mitochondrial substrate carrier family proteinO.I.H.G.S.X.
0.3863.70.95PtpAffx.212038.1.S1_s_atpmrna23631hypothetical protein-1e-153At2g20420succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, putative / SCS-beta, putativeO.I.H.G.S.X.
0.3762.30.93PtpAffx.7625.4.S1_a_atCX174671hypothetical protein-5e-24At1g53240malate dehydrogenase (NAD), mitochondrialO.I.H.G.S.X.
0.3559.70.93PtpAffx.111048.1.S1_atBU883776hypothetical protein-2e-94At2g22480PFK5 (PHOSPHOFRUCTOKINASE 5)O.I.H.G.S.X.
0.3255.20.94PtpAffx.5844.1.S1_atCX174548hypothetical protein-9e-5At1g68680unknown proteinO.I.H.G.S.X.
0.3153.70.94Ptp.5469.1.S1_s_atCX176421hypothetical protein-3e-47At1g27530-O.I.H.G.S.X.
0.3153.70.94PtpAffx.83752.1.S1_atCF231199hypothetical protein-3e-33At5g11650hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.
0.3052.00.94PtpAffx.11524.3.S1_atCV272635hypothetical protein-4e-28At5g23250succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putativeO.I.H.G.S.X.
0.2950.50.93PtpAffx.202120.1.S1_s_atpmrna4237hypothetical protein-3e-83At2g35170MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-relatedO.I.H.G.S.X.
0.2850.50.95Ptp.6147.1.S1_s_atCA823443hypothetical protein-5e-46At1g65290mtACP2 (mitochondrial acyl carrier protein 2)O.I.H.G.S.X.
0.2850.50.94Ptp.6307.1.S1_atCV240855hypothetical protein-9e-6At5g16510reversibly glycosylated polypeptide, putativeO.I.H.G.S.X.
0.2747.10.95PtpAffx.17919.2.A1_x_atCV275513--4e-26At3g04770RPSAb (40S ribosomal protein SA B)O.I.H.G.S.X.
0.2747.10.92Ptp.929.2.A1_s_atCV275793hypothetical protein-4e-1At1g54140TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT)O.I.H.G.S.X.
0.2645.20.94Ptp.6124.1.S1_atDN500469hypothetical protein-7e-24At5g58950protein kinase family proteinO.I.H.G.S.X.
0.2543.60.95Ptp.6945.1.S1_atCV282639hypothetical protein-6e-38At5g16440IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)O.I.H.G.S.X.
0.2543.60.93PtpAffx.1107.1.A1_s_atCV276017hypothetical protein-4e-17At3g52300ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL)O.I.H.G.S.X.
0.2441.80.93PtpAffx.126445.1.S1_s_atCX182478hypothetical protein-2e-6At1g47290AT3BETAHSD/D1 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1)O.I.H.G.S.X.
0.2340.50.94PtpAffx.36261.2.S1_a_atCX183660hypothetical protein-3e-2At1g60800NIK3 (NSP-INTERACTING KINASE 3)O.I.H.G.S.X.
0.2238.30.94Ptp.2004.1.A1_atCK093656--4e-42At3g13930dihydrolipoamide S-acetyltransferase, putativeO.I.H.G.S.X.
0.2238.30.95PtpAffx.213713.1.S1_atpmrna26762hypothetical protein-3e-9At3g51650unknown proteinO.I.H.G.S.X.
0.2238.30.95Ptp.2161.1.S1_s_atCK089812Sec61 transport protein-1e-12At1g29310P-P-bond-hydrolysis-driven protein transmembrane transporterO.I.H.G.S.X.
0.2238.30.94PtpAffx.163838.2.S1_a_atBU879285hypothetical protein-1e-34At2g01140fructose-bisphosphate aldolase, putativeO.I.H.G.S.X.
0.2136.50.94Ptp.2051.1.S1_atCV243394hypothetical protein-2e-16At2g39990EIF2O.I.H.G.S.X.
0.2034.60.94PtpAffx.132235.1.A1_atDN484556--4e+0At3g45443unknown proteinO.I.H.G.S.X.
0.1932.70.95Ptp.2351.1.S1_atCF936500hypothetical protein-2e-6At4g30010unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.193.2GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.092.9GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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