Co-expression analysis

Gene ID	PtpAffx.206762.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g80330: GA3OX4 (GIBBERELLIN 3-OXIDASE 4) (HF=3e-2)
Module size	6 genes
NF	0.21
%ile	39.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	87.0	0.85	PtpAffx.206762.1.S1_at	pmrna13424	-	-	3e-2	At1g80330	GA3OX4 (GIBBERELLIN 3-OXIDASE 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.87	PtpAffx.147163.1.A1_at	CV267314	hypothetical protein	-	4e-1	At4g23260	ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.87	PtpAffx.249.353.A1_at	CV273034	-	-	5e-1	At2g04070	antiporter/ drug transporter/ transporter	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.85	PtpAffx.152255.1.S1_at	CV274461	-	-	4e-60	At1g52980	GTP-binding family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.87	PtpAffx.125515.1.S1_at	CX173846	-	-	8e+0	At4g16410	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.86	PtpAffx.219237.1.S1_at	pmrna35094	multidrug resistance protein ABC transporter family	-	2e-12	At1g30410	ATMRP13	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.1	98.1	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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