Co-expression analysis

Gene ID	PtpAffx.206540.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g28080: binding (HF=8e-36)
Module size	12 genes
NF	0.31
%ile	54.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.78	95.1	0.93	PtpAffx.206540.1.S1_at	pmrna12974	hypothetical protein	-	8e-36	At4g28080	binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.94	PtpAffx.212770.1.S1_at	pmrna24990	hypothetical protein	-	7e-9	At1g27510	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.92	PtpAffx.62367.1.S1_at	AJ780727	hypothetical protein	-	6e-114	At4g28080	binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.94	PtpAffx.212628.1.S1_s_at	pmrna24722	hypothetical protein	-	5e-12	At5g53170	FTSH11 (FtsH protease 11)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.94	PtpAffx.68644.1.S1_at	CX180837	hypothetical protein	-	4e-10	At4g17300	NS1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.94	PtpAffx.118347.1.S1_at	DN496642	hypothetical protein	-	3e-1	At1g67950	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.96	PtpAffx.132845.1.S1_at	CN523811	hypothetical protein	-	1e-75	At3g58140	phenylalanyl-tRNA synthetase class IIc family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.93	PtpAffx.158462.1.S1_at	CX171770	predicted membrane protein	-	5e-6	At4g13590	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.95	PtpAffx.218659.1.S1_at	pmrna34356	hypothetical protein	-	5e-3	At4g02510	TOC159 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 159)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.96	PtpAffx.135096.2.S1_a_at	BI122655	hypothetical protein	-	8e-17	At4g02790	GTP-binding family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.94	PtpAffx.38860.2.S1_a_at	AJ775056	amidase family protein	-	1e-7	At1g08980	AMI1 (AMIDASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.94	Ptp.4572.1.S1_at	BU813363	hypothetical protein	-	4e-20	At5g26742	emb1138 (embryo defective 1138)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.0	96.6	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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