Co-expression analysis

Gene ID PtpAffx.206329.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g53880: unknown protein (HF=2e-1)
Module size 6 genes
NF 0.00
%ile 0.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8397.00.77PtpAffx.206329.1.S1_atpmrna12564hypothetical protein-2e-1At5g53880unknown proteinO.I.H.G.S.X.
0.023.60.77PtpAffx.204762.1.S1_atpmrna9376hypothetical protein-2e+0At4g33120coclaurine N-methyltransferase, putativeO.I.H.G.S.X.
0.012.20.77PtpAffx.145059.1.A1_atDN490321--9e+0At5g66400RAB18 (RESPONSIVE TO ABA 18)O.I.H.G.S.X.
0.012.20.78PtpAffx.34384.1.S1_s_atBU8239424-coumarate-coa ligase-4e-1At5g22460esterase/lipase/thioesterase family proteinO.I.H.G.S.X.
-0.40.82PtpAffx.220689.1.S1_atpmrna37099--4e+0At1g64142CPuORF23 (Conserved peptide upstream open reading frame 23)O.I.H.G.S.X.
-0.40.77PtpAffx.12675.4.A1_s_atCV271770hypothetical protein-3e-2At5g49490AGL83 (AGAMOUS-LIKE 83)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.399.2GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
9.798.9GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.395.8GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.289.3GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM327406Populus balsamifera_1006_young_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.987.2GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM327281Populus balsamifera_20071015_Seedling_continuous_light_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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