Co-expression analysis

Gene ID	PtpAffx.206211.1.S1_x_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g13060: - (HF=2e-19)
Module size	6 genes
NF	0.38
%ile	65.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	71.9	0.96	PtpAffx.206211.1.S1_x_at	pmrna12333	hypothetical protein	-	2e-19	At3g13060	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	PtpAffx.1066.8.S1_at	AI164085	hypothetical protein	-	3e-8	At5g05010	clathrin adaptor complexes medium subunit-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.97	PtpAffx.148931.1.S1_at	CF229441	hypothetical protein	-	1e-4	At1g49590	formin-binding protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.97	Ptp.3628.1.S1_s_at	CV237125	hypothetical protein	-	1e-21	At4g32330	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.97	Ptp.7424.1.S1_at	BU861469	hypothetical protein	-	7e-52	At1g12840	DET3 (DE-ETIOLATED 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.96	Ptp.7396.2.S1_at	BI128657	hypothetical protein	-	3e-63	At2g30880	pleckstrin homology (PH) domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.4	97.0	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.0	88.0	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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