Co-expression analysis

Gene ID PtpAffx.206196.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g19090: unknown protein (HF=4e-19)
Module size 7 genes
NF 0.40
%ile 68.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5380.50.92PtpAffx.206196.1.S1_atpmrna12304hypothetical protein-4e-19At2g19090unknown proteinO.I.H.G.S.X.
0.5784.20.94PtpAffx.209407.1.S1_atpmrna18634hypothetical protein-2e-39At2g38970zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4471.90.93PtpAffx.204628.1.S1_s_atpmrna9099hypothetical protein-3e+0At4g00232unknown proteinO.I.H.G.S.X.
0.3559.70.92Ptp.2035.1.S1_s_atBU894397hypothetical protein-3e-21At4g24060Dof-type zinc finger domain-containing proteinO.I.H.G.S.X.
0.3357.50.92PtpAffx.56940.1.A1_atCV243741hypothetical protein-1e-2At5g62900unknown proteinO.I.H.G.S.X.
0.3153.70.92PtpAffx.221194.1.S1_x_atpmrna37884hypothetical protein-1e-2At5g42830transferase family proteinO.I.H.G.S.X.
0.3052.00.92PtpAffx.9361.1.A1_atCV241621hypothetical protein-1e-6At1g77660MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-relatedO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.098.9GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.694.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.594.3GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM372044Clone1979_LPI5_N+_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.691.3GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.490.4GSM327281Populus balsamifera_20071015_Seedling_continuous_light_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM244433Mlp infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.785.5GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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