Co-expression analysis

Gene ID	PtpAffx.206163.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g41480: electron carrier/ heme binding / peroxidase (HF=5e-13)
Module size	11 genes
NF	0.13
%ile	25.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	84.9	0.83	PtpAffx.206163.1.S1_at	pmrna12232	hypothetical protein	-	5e-13	At2g41480	electron carrier/ heme binding / peroxidase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.84	PtpAffx.219632.1.S1_at	pmrna35594	hypothetical protein	-	2e+0	At4g24070	carbon-carbon lyase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.84	PtpAffx.140465.1.A1_at	CV257226	-	-	1e+1	At4g07825	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.88	PtpAffx.200917.1.S1_at	pmrna1808	hypothetical protein	-	9e-35	At2g30130	ASL5	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.87	PtpAffx.77335.1.S1_at	DN493413	hypothetical protein	-	4e-1	At2g29450	ATGSTU5 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.84	PtpAffx.18039.1.A1_at	CV263969	-	-	1e-3	At2g47060	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.88	PtpAffx.36788.2.S1_at	CK106901	hypothetical protein	-	1e-6	At4g36450	ATMPK14 (Mitogen-activated protein kinase 14)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.88	PtpAffx.77318.2.S1_at	CX658035	hypothetical protein	-	5e-4	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.88	PtpAffx.211137.1.S1_at	pmrna21879	hypothetical protein	-	5e-8	At3g03540	NPC5 (NON-SPECIFIC PHOSPHOLIPASE C5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.88	Ptp.3664.1.S1_at	BU836355	hypothetical protein	-	2e-37	At2g17530	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.83	PtpAffx.131798.1.S1_at	DN501875	hypothetical protein	-	5e+0	At5g23920	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	93.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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