Co-expression analysis

Gene ID	PtpAffx.206136.1.S1_at
Gene name	cation proton exchanger
Homology with Arabidopsis	Similar to At3g53720: ATCHX20 (CATION/H+ EXCHANGER 20) (HF=1e-9)
Module size	19 genes
NF	0.42
%ile	70.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	97.7	0.85	PtpAffx.206136.1.S1_at	pmrna12170	cation proton exchanger	-	1e-9	At3g53720	ATCHX20 (CATION/H+ EXCHANGER 20)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.90	PtpAffx.4977.1.A1_at	CV267024	cytochrome P450	-	3e+0	At5g22990	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.54	80.8	0.91	PtpAffx.39900.1.A1_at	CV274012	hypothetical protein	-	4e-1	At4g11210	disease resistance-responsive family protein / dirigent family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.54	80.8	0.88	Ptp.8133.1.S1_s_at	BU896650	hypothetical protein	-	3e-2	At1g20160	ATSBT5.2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.52	79.4	0.87	PtpAffx.214578.1.S1_at	pmrna28339	sodium transporter hkt1-like protein	-	4e-6	At4g10310	HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.51	78.9	0.89	PtpAffx.2210.1.A1_at	CV257084	hypothetical protein	-	1e-1	At3g16300	integral membrane family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.49	75.7	0.89	PtpAffx.216729.1.S1_s_at	pmrna31704	cytochrome P450 /// cytochrome P450 /// cytochrome P450 /// cytochrome P450 /// hypothetical protein /// hypothetical protein	-	6e-5	At1g66540	cytochrome P450, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.49	75.7	0.87	PtpAffx.216927.1.S1_at	pmrna32003	hypothetical protein	-	5e-4	At1g49470	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.91	PtpAffx.146541.1.A1_at	CV272978	cytochrome P450	-	2e+0	At5g35695	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.45	72.3	0.91	PtpAffx.221304.1.S1_at	pmrna38091	white-brown-complex ABC transporter family	-	1e-6	At1g71960	ABC transporter family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.89	PtpAffx.90112.1.S1_at	CV236980	-	-	1e-7	At4g30460	glycine-rich protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.90	PtpAffx.18783.1.A1_at	CV233908	amino acid permease	-	1e-19	At1g77380	AAP3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.89	PtpAffx.5951.1.S1_at	CV228075	-	-	1e-1	At4g12330	CYP706A7	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.88	PtpAffx.62549.1.A1_at	CV275052	-	-	4e-1	At1g03800	ERF10 (ERF DOMAIN PROTEIN 10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.87	PtpAffx.5070.1.A1_at	CV273039	-	-	6e-4	At2g18360	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.90	PtpAffx.83904.1.S1_at	BU824599	-	-	2e+0	At2g01110	APG2 (ALBINO AND PALE GREEN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.90	Ptp.3872.1.S1_at	DN488532	-	-	2e+0	Atmg00110	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.87	PtpAffx.210777.1.S1_at	pmrna21147	hypothetical protein	-	1e-7	At5g51780	basix helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.88	PtpAffx.206282.1.S1_at	pmrna12451	hypothetical protein	-	7e-11	At2g37900	proton-dependent oligopeptide transport (POT) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	96.8	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.5	94.3	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.6	84.5	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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