Co-expression analysis

Gene ID	PtpAffx.206073.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g57050: CBL (cystathionine beta-lyase) (HF=9e-9)
Module size	22 genes
NF	0.26
%ile	46.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.84	PtpAffx.206073.1.S1_at	pmrna12036	-	-	9e-9	At3g57050	CBL (cystathionine beta-lyase)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.89	PtpAffx.5906.2.A1_at	CV226624	-	-	7e-1	At1g61660	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.86	PtpAffx.213147.1.S1_at	pmrna25726	hypothetical protein	-	1e+0	At5g23920	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.89	PtpAffx.213284.1.S1_at	pmrna25977	hypothetical protein	-	3e-20	At4g35270	RWP-RK domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.87	PtpAffx.212238.1.S1_x_at	pmrna23993	hypothetical protein	-	3e-1	At1g62240	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.90	PtpAffx.98284.1.S1_at	DN501196	-	-	1e-1	At5g44150	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.90	PtpAffx.249.419.A1_at	CV244764	-	-	1e-1	At2g01150	RHA2B (RING-H2 FINGER PROTEIN 2B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.93	PtpAffx.64399.1.S1_at	CN523899	bile acid:Na+ symporter family protein	-	2e-21	At2g26900	bile acid:sodium symporter family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.90	Ptp.5046.1.S1_at	CV258172	hypothetical protein	-	1e-46	At1g74210	glycerophosphoryl diester phosphodiesterase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.90	PtpAffx.153960.1.A1_s_at	CV235434	hypothetical protein	-	3e-13	At1g74210	glycerophosphoryl diester phosphodiesterase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.94	PtpAffx.122511.1.S1_at	CN518509	bile acid:Na+ symporter family protein	-	5e-12	At2g26900	bile acid:sodium symporter family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.94	PtpAffx.115895.1.S1_s_at	CN523404	hypothetical protein	-	9e-18	At5g08030	glycerophosphoryl diester phosphodiesterase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.91	PtpAffx.133056.1.S1_at	CX177164	-	-	2e-2	At5g64330	NPH3 (NON-PHOTOTROPIC HYPOCOTYL 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.91	Ptp.16.2.S1_at	CV243804	-	-	8e-9	At5g03300	ADK2 (ADENOSINE KINASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.90	PtpAffx.221766.1.S1_at	pmrna38815	hypothetical protein	-	2e-32	At4g31120	SKB1 (SHK1 BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.90	PtpAffx.104578.1.A1_at	CV243775	hypothetical protein	-	4e-10	At2g20000	HBT (HOBBIT)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.89	PtpAffx.153190.1.A1_at	CV266744	hypothetical protein	-	9e-1	At5g57060	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.89	PtpAffx.221011.1.S1_s_at	pmrna37540	hypothetical protein	-	4e-3	At1g71040	LPR2 (Low Phosphate Root2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.87	PtpAffx.12330.1.A1_at	CV231292	hypothetical protein	-	7e+0	At5g17140	cysteine proteinase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.87	PtpAffx.213469.1.S1_at	pmrna26332	hypothetical protein	-	3e+0	At5g65070	MAF4 (MADS AFFECTING FLOWERING 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.87	PtpAffx.213277.1.S1_at	pmrna25967	hypothetical protein	-	1e-71	At3g57200	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.88	PtpAffx.223632.1.S1_s_at	pmrna41715	hypothetical protein	-	7e-26	At4g18905	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.2	95.6	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.4	90.4	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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