Co-expression analysis

Gene ID	PtpAffx.205944.1.S1_s_at
Gene name	ZIP transporter /// ZIP transporter /// ZIP transporter
Homology with Arabidopsis	Similar to At3g12750: ZIP1 (ZINC TRANSPORTER 1 PRECURSOR) (HF=5e-10)
Module size	17 genes
NF	0.25
%ile	45.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.68	91.3	0.90	PtpAffx.205944.1.S1_s_at	pmrna11796	ZIP transporter /// ZIP transporter /// ZIP transporter	-	5e-10	At3g12750	ZIP1 (ZINC TRANSPORTER 1 PRECURSOR)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.94	PtpAffx.201191.1.S1_a_at	pmrna2355	porin/voltage-dependent anion-selective channel protein	-	2e+0	At1g23110	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	0.94	PtpAffx.215345.1.S1_at	pmrna29476	hypothetical protein	-	6e-92	At5g52882	ATP binding / nucleoside-triphosphatase/ nucleotide binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.93	PtpAffx.39413.1.S1_at	BI123070	-	-	1e+0	At5g40690	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.93	PtpAffx.222633.1.S1_at	pmrna40178	hypothetical protein	-	1e-2	At1g20560	AAE1 (ACYL ACTIVATING ENZYME 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.94	Ptp.4675.1.S1_s_at	CF233061	cytochrome P450	-	2e-5	At2g40890	CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.95	PtpAffx.136820.1.S1_at	CV275296	hypothetical protein	-	6e-24	At1g71010	phosphatidylinositol-4-phosphate 5-kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.92	PtpAffx.10695.1.A1_at	CV255466	hypothetical protein	-	3e-8	At5g61820	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.94	Ptp.5026.1.S1_s_at	CV237468	hypothetical protein	-	6e-7	At3g51370	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.93	PtpAffx.210274.1.S1_at	pmrna20208	hypothetical protein	-	3e-12	At3g49200	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.94	PtpAffx.62726.1.A1_at	CV268321	-	-	6e+0	At2g47920	kinase interacting family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.92	PtpAffx.213306.1.S1_at	pmrna26027	hypothetical protein	-	8e-18	At5g06839	bZIP family transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.94	PtpAffx.163926.1.S1_at	BU891048	hypothetical protein	-	4e-13	At4g25030	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.92	PtpAffx.12059.1.S1_at	CA927399	hypothetical protein	-	4e-31	At3g01420	DOX1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.95	PtpAffx.212897.1.S1_s_at	pmrna25241	hypothetical protein	-	3e-49	At4g24970	ATP-binding region, ATPase-like domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.94	PtpAffx.223878.1.S1_at	pmrna42098	hypothetical protein	-	1e+0	At2g23960	defense-related protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.94	PtpAffx.141473.1.S1_s_at	CN549565	hypothetical protein	-	4e-10	At1g31910	GHMP kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.3	97.7	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.5	90.9	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.8	86.4	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.6	84.5	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.6	84.5	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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