Co-expression analysis

Gene ID PtpAffx.205903.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g04570: DNA-binding protein-related (HF=4e-9)
Module size 10 genes
NF 0.58
%ile 88.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5078.60.96PtpAffx.205903.1.S1_atpmrna11702hypothetical protein-4e-9At3g04570DNA-binding protein-relatedO.I.H.G.S.X.
0.7694.30.96Ptp.3814.1.S1_s_atBU887656--4e-1At2g46505SDH4O.I.H.G.S.X.
0.7493.80.96PtpAffx.48080.1.A1_atCV272435--7e-10At5g15120unknown proteinO.I.H.G.S.X.
0.6388.10.96PtpAffx.7270.1.S1_atBP934532AP2/ERF domain-containing transcription factor-5e-14At2g47520AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.6287.20.96PtpAffx.59463.1.A1_atCK091900--4e-1At5g44290protein kinase family proteinO.I.H.G.S.X.
0.6086.00.96PtpAffx.32681.1.S1_atCK105190--3e-10At1g53050protein kinase family proteinO.I.H.G.S.X.
0.5078.60.96PtpAffx.74280.1.A1_atCV254557AP2/ERF domain-containing transcription factor-3e+0At5g49210unknown proteinO.I.H.G.S.X.
0.4875.40.96PtpAffx.25439.1.A1_atCV257469hypothetical protein-1e+0At5g16770AtMYB9 (myb domain protein 9)O.I.H.G.S.X.
0.4774.60.95PtpAffx.158921.1.S1_atBP929076hypothetical protein-5e-27At1g76490HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1)O.I.H.G.S.X.
0.4572.30.96PtpAffx.90384.1.S1_atCK108669--5e-1At4g16610zinc finger (C2H2 type) family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.897.4GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.995.1GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.289.3GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM372093Clone3200_LPI5_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.886.4GSM328561Populus x canescens root control_rep_12GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.785.5GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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