Co-expression analysis

Gene ID PtpAffx.205886.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g42880: ATMPK20 (HF=7e-1)
Module size 8 genes
NF 0.29
%ile 51.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7895.10.94PtpAffx.205886.1.S1_atpmrna11667hypothetical protein-7e-1At2g42880ATMPK20O.I.H.G.S.X.
0.4268.60.94Ptp.4786.1.S1_atBU833557hypothetical protein-7e-30At3g06860MFP2 (MULTIFUNCTIONAL PROTEIN 2)O.I.H.G.S.X.
0.4268.60.94PtpAffx.205886.1.S1_x_atpmrna11667hypothetical protein-7e-1At2g42880ATMPK20O.I.H.G.S.X.
0.3661.60.95PtpAffx.136498.1.S1_atCF230021hypothetical protein-6e-3At1g52260ATPDIL1-5 (PDI-LIKE 1-5)O.I.H.G.S.X.
0.2238.30.96Ptp.4606.1.S1_atBP922769hypothetical protein-1e-40At4g28390AAC3 (ADP/ATP CARRIER 3)O.I.H.G.S.X.
0.1932.70.94PtpAffx.90918.1.S1_atCF236401hypothetical protein-3e-5At3g58040SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2)O.I.H.G.S.X.
0.1932.70.94PtpAffx.157368.1.S1_s_atCX173669hypothetical protein-3e-14At2g35020UTP--glucose-1-phosphate uridylyltransferase family proteinO.I.H.G.S.X.
0.1626.90.95PtpAffx.249.468.A1_atCF119463hypothetical protein-3e-97At1g56410ERD2 (EARLY-RESPONSIVE TO DEHYDRATION 2)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.794.7GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.193.2GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.684.5GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage