Co-expression analysis

Gene ID PtpAffx.205723.1.S1_x_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g22930: calmodulin, putative (HF=2e-5)
Module size 6 genes
NF 0.50
%ile 80.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8397.00.93PtpAffx.205723.1.S1_x_atpmrna11295hypothetical protein-2e-5At3g22930calmodulin, putativeO.I.H.G.S.X.
0.5078.60.93PtpAffx.224796.1.S1_s_atpmrna43650hypothetical protein-5e-5At2g34790MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)O.I.H.G.S.X.
0.5078.60.95PtpAffx.202093.1.S1_s_atpmrna4169hypothetical protein-6e-2At1g10370ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9)O.I.H.G.S.X.
0.4067.00.93PtpAffx.204743.1.S1_atpmrna9337hypothetical protein-3e-1At5g46030unknown proteinO.I.H.G.S.X.
0.3357.50.93PtpAffx.5989.2.S1_s_atCV259773hypothetical protein-6e-8At5g25880ATNADP-ME3 (NADP-malic enzyme 3)O.I.H.G.S.X.
0.3052.00.93PtpAffx.207438.1.S1_atpmrna14771hypothetical protein-3e-1At5g42146unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.898.0GSM372042Clone1979_LPI5_N-_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
5.497.0GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.096.6GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.096.6GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.096.6GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.395.8GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.794.7GSM372044Clone1979_LPI5_N+_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
3.393.7GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.389.8GSM372097Clone3200_LPI5_N-_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.9933.1.A1_at, orthologous to the query gene, PtpAffx.205723.1.S1_x_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7792.1Zm.9933.1.A1_atAt3g22930--2e-5At2g19160unknown proteinO.I.H.G.S.X.
0.6986.5ZmAffx.525.1.S1_atAt3g22930--8e-1At5g23170protein kinase family proteinO.I.H.G.S.X.
0.6481.7Zm.12070.1.A1_atAt3g22930ribonuclease P-2e-1At3g02090mitochondrial processing peptidase beta subunit, putativeO.I.H.G.S.X.
0.5976.1ZmAffx.13.1.S1_s_atAt3g22930cellulose synthase 11-2e-61At4g18780IRX1 (IRREGULAR XYLEM 1)O.I.H.G.S.X.
0.5976.1ZmAffx.781.1.A1_atAt3g22930--1e+1At4g37450AGP18 (ARABINOGALACTAN PROTEIN 18)O.I.H.G.S.X.
0.5875.1ZmAffx.98.1.S1_atAt3g22930hypothetical protein LOC100273144-1e+1At2g36026-O.I.H.G.S.X.
0.5571.6Zm.14116.1.S1_atAt3g22930--6e-14At4g17020transcription factor-relatedO.I.H.G.S.X.
0.5571.6------O.I.H.G.S.X.
0.5369.1Zm.18090.1.S1_atAt3g22930golgi SNARE 12 protein-1e-8At1g15880GOS11 (golgi snare 11)O.I.H.G.S.X.
0.5166.4Zm.4848.2.S1_a_atAt3g22930SIR2-like histone deacetylase-2e-1At5g55760SRT1 (sirtuin 1)O.I.H.G.S.X.
0.5166.4Zm.17332.1.A1_atAt3g22930--4e+0At2g29590thioesterase family proteinO.I.H.G.S.X.
0.4961.9Zm.5028.1.S1_atAt3g22930splicing factor, arginine/serine-rich 12-1e+0At4g23770unknown proteinO.I.H.G.S.X.
0.4961.9Zm.2864.1.S1_atAt3g22930nucleotide-binding protein 1-4e-33At5g50960NBP35 (NUCLEOTIDE BINDING PROTEIN 35)O.I.H.G.S.X.
0.4759.9ZmAffx.106.1.S1_atAt3g22930--3e+0At4g14060major latex protein-related / MLP-relatedO.I.H.G.S.X.
0.4556.4Zm.13940.1.S1_atAt3g22930hypothetical protein LOC100193246-1e+0At4g0081060S acidic ribosomal protein P1 (RPP1B)O.I.H.G.S.X.
0.4352.8Zm.2805.1.A1_atAt3g22930hypothetical protein LOC100274443-5e+0At4g13266unknown proteinO.I.H.G.S.X.
0.4251.3Zm.15937.1.A1_atAt3g22930--5e+0At3g25200unknown proteinO.I.H.G.S.X.
0.4251.3Zm.13616.1.S1_atAt3g22930--2e+0At4g25315Expressed proteinO.I.H.G.S.X.
0.4048.5ZmAffx.1080.1.S1_atAt3g22930--7e-1At1g22790unknown proteinO.I.H.G.S.X.
0.4048.5ZmAffx.105.1.S1_atAt3g22930--3e+0At4g20000VQ motif-containing proteinO.I.H.G.S.X.
0.3945.6Zm.6083.2.A1_a_atAt3g22930hypothetical protein LOC100216609-1e-33At5g23250succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putativeO.I.H.G.S.X.
0.3844.2Zm.15776.1.S1_atAt3g22930--6e+0At5g46025Ras-related GTP-binding family proteinO.I.H.G.S.X.
0.3844.2ZmAffx.1038.1.S1_atAt3g22930hypothetical protein LOC100273522-3e+0At5g5729060S acidic ribosomal protein P3 (RPP3B)O.I.H.G.S.X.
0.3742.3Zm.9508.1.A1_atAt3g22930--9e-3At5g28040transcription regulatorO.I.H.G.S.X.
0.3641.3Zm.9991.1.S1_atAt3g22930hypothetical protein LOC100191513-7e-17At5g093002-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera



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