Co-expression analysis

Gene ID	PtpAffx.205723.1.S1_x_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g22930: calmodulin, putative (HF=2e-5)
Module size	6 genes
NF	0.50
%ile	80.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	97.0	0.93	PtpAffx.205723.1.S1_x_at	pmrna11295	hypothetical protein	-	2e-5	At3g22930	calmodulin, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.93	PtpAffx.224796.1.S1_s_at	pmrna43650	hypothetical protein	-	5e-5	At2g34790	MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.95	PtpAffx.202093.1.S1_s_at	pmrna4169	hypothetical protein	-	6e-2	At1g10370	ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.93	PtpAffx.204743.1.S1_at	pmrna9337	hypothetical protein	-	3e-1	At5g46030	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.93	PtpAffx.5989.2.S1_s_at	CV259773	hypothetical protein	-	6e-8	At5g25880	ATNADP-ME3 (NADP-malic enzyme 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.93	PtpAffx.207438.1.S1_at	pmrna14771	hypothetical protein	-	3e-1	At5g42146	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.8	98.0	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.4	97.0	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.0	96.6	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.0	96.6	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.0	96.6	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.3	93.7	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

A co-expression module including the soybean gene, Gma.3223.1.S1_at, orthologous to the query gene, PtpAffx.205723.1.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	92.5	Gma.3223.1.S1_at	At3g22930	calmodulin	-	7e-41	At3g22930	calmodulin, putative	O.I.	H.G.	S.X.	Please select
0.15	18.7	Gma.5170.1.A1_at	At3g22930	-	-	5e-9	At1g13890	SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30)	O.I.	H.G.	S.X.	Please select
0.13	16.3	Gma.15721.1.S1_at	At3g22930	-	-	4e-5	At2g10560	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	10.2	Gma.3285.1.S1_at	At3g22930	-	-	3e-4	At5g01750	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	9.0	Gma.17842.1.S1_s_at	At3g22930	calmodulin	-	4e-35	At3g22930	calmodulin, putative	O.I.	H.G.	S.X.	Please select
0.04	7.0	GmaAffx.5448.1.S1_at	At3g22930	-	-	1e-1	At5g54340	zinc finger (C2H2 type) protein-related	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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