CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.205723.1.S1_x_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g22930: calmodulin, putative (HF=2e-5)

Module size 6 genes

NF 0.50

%ile 80.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 97.0 0.93 PtpAffx.205723.1.S1_x_at pmrna11295 hypothetical protein - 2e-5 At3g22930 calmodulin, putative O.I. H.G. S.X.
0.50 78.6 0.93 PtpAffx.224796.1.S1_s_at pmrna43650 hypothetical protein - 5e-5 At2g34790 MEE23 (MATERNAL EFFECT EMBRYO ARREST 23) O.I. H.G. S.X.
0.50 78.6 0.95 PtpAffx.202093.1.S1_s_at pmrna4169 hypothetical protein - 6e-2 At1g10370 ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9) O.I. H.G. S.X.
0.40 67.0 0.93 PtpAffx.204743.1.S1_at pmrna9337 hypothetical protein - 3e-1 At5g46030 unknown protein O.I. H.G. S.X.
0.33 57.5 0.93 PtpAffx.5989.2.S1_s_at CV259773 hypothetical protein - 6e-8 At5g25880 ATNADP-ME3 (NADP-malic enzyme 3) O.I. H.G. S.X.
0.30 52.0 0.93 PtpAffx.207438.1.S1_at pmrna14771 hypothetical protein - 3e-1 At5g42146 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.8 98.0 GSM372042 Clone1979_LPI5_N-_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.4 97.0 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.0 96.6 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.0 96.6 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.0 96.6 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.3 95.8 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM372044 Clone1979_LPI5_N+_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.3 93.7 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3 89.8 GSM372097 Clone3200_LPI5_N-_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g22930, orthologous to the query gene, PtpAffx.205723.1.S1_x_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.27 26.2 At3g22930 821865 calmodulin, putative F:calcium ion binding;P:biological_process unknown;C:unknown;MOFPBV O.I. H.G. S.X.
0.46 59.8 At2g43140 818916 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOBF O.I. H.G. S.X.
0.44 57.2 At1g08430 837363 ALMT1 (ALUMINUM-ACTIVATED MALATE TRANSPORTER 1) Encodes a Al-activated malate efflux transporter. Is essential for aluminum tolerance but does not represent the major Al tolerance QTL. Staurosporine and calyculin A both block all changes in AtALMT1 gene expression (as a result malate release is totally inhibited). O.I. H.G. S.X.
0.23 19.3 At2g02680 814797 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:intracellular;PMOF O.I. H.G. S.X.
0.22 17.5 At2g47260 819339 WRKY23 member of WRKY Transcription Factor; Group I O.I. H.G. S.X.
0.18 11.4 At2g41380 818736 embryo-abundant protein-related F:methyltransferase activity;P:response to cadmium ion;C:mitochondrion;BPFOMA O.I. H.G. S.X.
0.17 10.2 At2g44450 819052 BGLU15 (BETA GLUCOSIDASE 15) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plant-type cell wall;BOPMFA O.I. H.G. S.X.
0.08 2.3 At1g36920 840600 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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