Co-expression analysis

Gene ID PtpAffx.205574.1.S1_x_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g76990: ACR3 (HF=8e-53)
Module size 6 genes
NF 0.27
%ile 48.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.83PtpAffx.205574.1.S1_x_atpmrna11015hypothetical protein-8e-53At1g76990ACR3O.I.H.G.S.X.
0.6791.10.83PtpAffx.205574.1.S1_atpmrna11015hypothetical protein-8e-53At1g76990ACR3O.I.H.G.S.X.
0.5582.20.83PtpAffx.7604.7.A1_atCV261169--2e+0At1g54217Expressed proteinO.I.H.G.S.X.
0.2238.30.83PtpAffx.205070.1.S1_atpmrna10047hypothetical protein-1e-1At5g60800heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.1118.10.83PtpAffx.22176.1.A1_atCV239407hypothetical protein-1e-2At3g03020unknown proteinO.I.H.G.S.X.
0.0812.90.84PtpAffx.115064.1.A1_atCV233955l-ascorbate oxidase precursor-2e-15At5g21105L-ascorbate oxidase/ copper ion binding / oxidoreductaseO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.997.4GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.597.1GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.096.6GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM372100Clone3200_LPI5_N+_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.892.1GSM372099Clone3200_LPI5_N+_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.590.9GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.490.4GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.088.0GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM372098Clone3200_LPI5_N-_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.088.0GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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