CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.205555.1.S1_s_at

Gene name MIKC mads-box transcription factor /// hypothetical protein
Homology with Arabidopsis Similar to At5g20240: PI (PISTILLATA) (HF=2e-11)

Module size 6 genes

NF 0.64

%ile 92.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 0.98 PtpAffx.205555.1.S1_s_at pmrna10986 MIKC mads-box transcription factor /// hypothetical protein - 2e-11 At5g20240 PI (PISTILLATA) O.I. H.G. S.X.
0.67 91.1 0.98 PtpAffx.40743.1.A1_at DN485207 hypothetical protein - 4e-1 At2g14095 unknown protein O.I. H.G. S.X.
0.57 84.2 0.98 PtpAffx.225371.1.S1_at pmrna44680 hypothetical protein - 2e-3 At5g65940 CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1) O.I. H.G. S.X.
0.56 83.9 0.98 PtpAffx.225506.1.S1_at pmrna44897 hypothetical protein - 1e-6 At5g03620 subtilase family protein O.I. H.G. S.X.
0.50 78.6 0.98 PtpAffx.207395.1.S1_at pmrna14671 hypothetical protein - 3e-63 At3g51070 dehydration-responsive protein-related O.I. H.G. S.X.
0.43 69.7 0.98 PtpAffx.224567.1.S1_at pmrna43218 hypothetical protein - 5e-42 At1g50310 STP9 (SUGAR TRANSPORTER 9) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.0 98.0 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
6.7 97.9 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
6.3 97.7 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2 89.3 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the rice gene, Os01g0883100, orthologous to the query gene, PtpAffx.205555.1.S1_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.86 96.4 Os01g0883100 At5g20240 - PISTILLATA-like MADS box protein 1e-1 At5g20240 PI (PISTILLATA) O.I. H.G. S.X.
0.46 60.9 Os08g0531700 At5g20240 - Transcription factor, MADS-box domain containingprotein 6e-7 At2g03710 SEP4 (SEPALLATA 4) O.I. H.G. S.X.
0.38 46.9 Os09g0507200 At5g20240 - MADS box protein 1e-20 At3g02310 SEP2 (SEPALLATA 2) O.I. H.G. S.X.
0.38 46.9 Os03g0421000 At5g20240 - FYVE/PHD zinc finger domain containing protein 9e-1 At2g02450 ANAC035 (Arabidopsis NAC domain containing protein 35) O.I. H.G. S.X.
0.35 41.7 Os06g0653000 At5g20240 - Glossy1 homolog (Fragment) 7e-2 At5g57800 CER3 (ECERIFERUM 3) O.I. H.G. S.X.
0.23 21.2 Os05g0423400 At5g20240 - PISTILLATA-like MADS box protein 4e-8 At3g57230 AGL16 (AGAMOUS-LIKE 16) O.I. H.G. S.X.
0.16 11.3 Os10g0471100 At5g20240 - Sterol desaturase family protein 5e-9 At2g37700 catalytic/ iron ion binding / oxidoreductase O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage