Co-expression analysis

Gene ID	PtpAffx.205485.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g78060: glycosyl hydrolase family 3 protein (HF=9e-17)
Module size	6 genes
NF	0.31
%ile	54.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.29	50.5	0.87	PtpAffx.205485.1.S1_at	pmrna10849	hypothetical protein	-	9e-17	At1g78060	glycosyl hydrolase family 3 protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.87	PtpAffx.82348.1.A1_at	CV250595	autoinhibited calcium ATPase	-	4e+0	At5g60440	AGL62 (Agamous-like 62)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.87	PtpAffx.719.1.A1_at	CV270015	hypothetical protein	-	2e-8	At5g42980	ATTRX3 (THIOREDOXIN 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.87	PtpAffx.119347.1.S1_at	BU879601	hypothetical protein	-	1e+0	At4g19350	EMB3006 (embryo defective 3006)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.89	PtpAffx.204939.1.S1_at	pmrna9775	copper transporter	-	6e-2	At2g26975	copper transporter, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.87	PtpAffx.201989.1.S1_s_at	pmrna3968	hypothetical protein	-	4e-1	At2g43640	signal recognition particle 14 kDa family protein / SRP14 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	97.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.9	96.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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