Co-expression analysis

Gene ID PtpAffx.205481.1.S1_x_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g17450: heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related (HF=5e-1)
Module size 7 genes
NF 0.50
%ile 81.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.93PtpAffx.205481.1.S1_x_atpmrna10842hypothetical protein-5e-1At5g17450heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedO.I.H.G.S.X.
0.5984.90.94PtpAffx.225031.1.S1_atpmrna44055hypothetical protein-1e-3At3g55550lectin protein kinase, putativeO.I.H.G.S.X.
0.5078.60.95PtpAffx.214482.1.S1_atpmrna28166hypothetical protein-4e-21At4g31000calmodulin-binding proteinO.I.H.G.S.X.
0.4875.40.94PtpAffx.11623.1.A1_atCV260515hypothetical protein-8e-25At5g09850transcription elongation factor-relatedO.I.H.G.S.X.
0.4673.70.95PtpAffx.20260.2.S1_a_atCV257316hypothetical protein-1e-3At4g22190unknown proteinO.I.H.G.S.X.
0.4673.70.95PtpAffx.13792.2.S1_atCV283738hypothetical protein-7e-14At4g10610CID12O.I.H.G.S.X.
0.2950.50.93PtpAffx.207242.1.S1_s_atpmrna14353hypothetical protein-2e-20At4g35470leucine-rich repeat family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.697.9GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.797.3GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.095.3GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.794.7GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.694.5GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM327403Populus balsamifera_20071015_Etiolated_seedling_6d_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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