Co-expression analysis

Gene ID	PtpAffx.205416.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g57230: AGL16 (AGAMOUS-LIKE 16) (HF=2e-21)
Module size	6 genes
NF	0.05
%ile	10.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	78.6	0.81	PtpAffx.205416.1.S1_at	pmrna10719	hypothetical protein	-	2e-21	At3g57230	AGL16 (AGAMOUS-LIKE 16)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.82	PtpAffx.218751.1.S1_at	pmrna34474	-	-	1e-7	At3g06110	MKP2 (MAPK PHOSPHATASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.83	PtpAffx.119972.1.A1_at	CK090441	gibberellin 20-oxidase	-	1e-19	At5g51810	GA20OX2 (GIBBERELLIN 20 OXIDASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.83	PtpAffx.203355.1.S1_at	pmrna6683	hypothetical protein	-	6e-1	Atmg00450	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.82	PtpAffx.207126.1.S1_at	pmrna14136	hypothetical protein	-	4e+0	At5g60130	transcriptional factor B3 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.83	PtpAffx.222153.1.S1_at	pmrna39394	hypothetical protein	-	3e-2	Atmg00030	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.5	98.6	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7	91.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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