Co-expression analysis

Gene ID PtpAffx.205346.1.S1_a_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g50610: unknown protein (HF=1e+0)
Module size 6 genes
NF 0.01
%ile 0.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7794.90.76PtpAffx.205346.1.S1_a_atpmrna10583hypothetical protein-1e+0At3g50610unknown proteinO.I.H.G.S.X.
0.0812.90.81PtpAffx.201625.1.S1_atpmrna3216hypothetical protein-7e-28At1g75520SRS5 (SHI-RELATED SEQUENCE 5)O.I.H.G.S.X.
0.012.20.83PtpAffx.215130.1.S1_atpmrna29139hypothetical protein-7e-8At1g32415pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
-0.40.85Ptp.5087.1.S1_s_atCF231827hypothetical protein-9e-8At3g07480electron carrier/ iron-sulfur cluster bindingO.I.H.G.S.X.
-0.40.79Ptp.6493.1.S1_atCK091970--3e-5At3g28510AAA-type ATPase family proteinO.I.H.G.S.X.
-0.40.83PtpAffx.249.481.S1_s_atCX180108--5e-37At5g13490AAC2 (ADP/ATP carrier 2)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.296.8GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.696.2GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.691.3GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM244432non infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.490.4GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.987.2GSM328077Populus x canescens leaf control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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