Co-expression analysis

Gene ID	PtpAffx.205177.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g10260: AtRABH1e (Arabidopsis Rab GTPase homolog H1e) (HF=4e-93)
Module size	6 genes
NF	0.20
%ile	38.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	80.5	0.91	PtpAffx.205177.1.S1_at	pmrna10251	hypothetical protein	-	4e-93	At5g10260	AtRABH1e (Arabidopsis Rab GTPase homolog H1e)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.90	PtpAffx.225253.1.S1_at	pmrna44474	hypothetical protein	-	1e-2	At5g44410	FAD-binding domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.92	PtpAffx.161461.1.S1_at	CV130586	hypothetical protein	-	1e-49	At3g57550	AGK2 (GUANYLATE KINASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.90	PtpAffx.159916.1.A1_at	CV255317	hypothetical protein	-	1e+0	At5g02090	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.90	Ptp.7558.1.A1_at	CA926122	hypothetical protein	-	6e-71	At5g13490	AAC2 (ADP/ATP carrier 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.91	PtpAffx.224513.1.S1_s_at	pmrna43126	hypothetical protein	-	1e-5	At4g19810	glycosyl hydrolase family 18 protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.3	98.2	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
6.0	97.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.4	94.0	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.8	92.1	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM327359	Populus balsamifera_20071015_Seedling_continuous_light_6d_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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