Co-expression analysis

Gene ID	PtpAffx.205140.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g40440: BTB/POZ domain-containing protein (HF=5e-1)
Module size	7 genes
NF	0.24
%ile	44.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	80.5	0.87	PtpAffx.205140.1.S1_at	pmrna10177	hypothetical protein	-	5e-1	At2g40440	BTB/POZ domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.88	PtpAffx.220802.1.S1_x_at	pmrna37242	hypothetical protein	-	3e+0	At5g37040	F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.88	PtpAffx.214660.1.S1_at	pmrna28469	hypothetical protein	-	7e-1	At4g24470	TIFY1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.88	PtpAffx.16012.1.S1_at	DN492894	-	-	5e+0	At5g44860	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.89	PtpAffx.121406.1.A1_s_at	CV241112	hypothetical protein	-	2e+0	At5g45790	ubiquitin thiolesterase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.87	PtpAffx.86753.1.A1_s_at	BU877246	hypothetical protein	-	2e+0	At5g05420	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.87	PtpAffx.206469.1.S1_at	pmrna12830	hypothetical protein	-	9e-3	At5g48890	transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	94.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.0	92.9	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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