Co-expression analysis

Gene ID	PtpAffx.205088.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g15050: glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein (HF=2e-3)
Module size	9 genes
NF	0.30
%ile	53.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	84.9	0.90	PtpAffx.205088.1.S1_at	pmrna10083	hypothetical protein	-	2e-3	At5g15050	glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.92	PtpAffx.911.1.A1_at	CV266781	hypothetical protein	-	3e-5	At1g76560	CP12-3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.93	PtpAffx.212628.1.S1_at	pmrna24722	hypothetical protein	-	5e-12	At5g53170	FTSH11 (FtsH protease 11)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.93	PtpAffx.120252.1.S1_s_at	CX171411	hypothetical protein	-	6e-6	At4g00730	ANL2 (ANTHOCYANINLESS 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.94	PtpAffx.211806.1.S1_at	pmrna23151	hypothetical protein	-	2e-37	At2g48120	PAC (PALE CRESS)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.94	PtpAffx.202114.1.S1_s_at	pmrna4230	hypothetical protein	-	5e-11	At1g02150	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.94	PtpAffx.129218.1.S1_at	CV256638	hypothetical protein	-	4e-8	At5g61760	ATIPK2BETA	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.94	PtpAffx.205793.1.S1_at	pmrna11455	-	-	2e-9	At1g45110	tetrapyrrole methylase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.95	PtpAffx.10139.1.A1_at	CV245605	hypothetical protein	-	8e-10	At1g10830	sodium symporter-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.6	97.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.5	97.1	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.4	82.3	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.4	82.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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