Co-expression analysis

Gene ID PtpAffx.204994.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g46200: unknown protein (HF=3e-1)
Module size 6 genes
NF 0.23
%ile 41.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8397.00.88PtpAffx.204994.1.S1_s_atpmrna9887hypothetical protein-3e-1At2g46200unknown proteinO.I.H.G.S.X.
0.4067.00.92PtpAffx.157387.1.S1_atBI129679hypothetical protein-3e-2At1g79420unknown proteinO.I.H.G.S.X.
0.3357.50.96PtpAffx.222336.1.S1_s_atpmrna39682hypothetical protein-2e-11At4g28370protein binding / zinc ion bindingO.I.H.G.S.X.
0.2543.60.94PtpAffx.155150.1.S1_atCN520331hypothetical protein-6e-3At4g10840kinesin light chain-relatedO.I.H.G.S.X.
0.2034.60.94PtpAffx.9498.1.A1_atCV259314--9e-16At1g77420hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.
0.0914.60.89Ptp.812.1.S1_s_atBU885143aquaporin, MIP family, PIP subfamily-4e-61At4g35100PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.398.2GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.594.3GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.594.3GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.892.1GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage