Co-expression analysis

Gene ID	PtpAffx.204990.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g25300: oxidoreductase, 2OG-Fe(II) oxygenase family protein (HF=2e-3)
Module size	6 genes
NF	0.05
%ile	10.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	86.0	0.91	PtpAffx.204990.1.S1_at	pmrna9881	hypothetical protein	-	2e-3	At4g25300	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.93	PtpAffx.210287.1.S1_s_at	pmrna20235	hypothetical protein	-	1e-51	At5g24310	ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.93	PtpAffx.212425.1.S1_at	pmrna24339	hypothetical protein	-	5e-20	At2g42400	VOZ2 (VASCULAR PLANT ONE ZINC FINGER PROTEIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.91	PtpAffx.200391.1.S1_at	pmrna783	hypothetical protein	-	2e-4	At5g41620	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.91	PtpAffx.49910.1.A1_at	CV257029	hypothetical protein	-	4e-20	At3g48980	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.91	PtpAffx.11878.1.S1_a_at	CV248713	AP2/ERF domain-containing transcription factor /// AP2/ERF domain-containing transcription factor	-	4e-8	At5g67190	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.9	98.0	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.6	97.9	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.5	97.1	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.4	95.9	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.0	95.3	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7	91.8	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1	88.6	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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